Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Moving some long read tools into GATK from a long-standing branch #8796

Closed
wants to merge 1 commit into from

Conversation

jonn-smith
Copy link
Collaborator

These tools have been in a branch for the greater part of 5 years. I've cleaned them up a bit and am not the original author... but I would like to merge them into master so we can use a standardized GATK version for this.

@jonn-smith
Copy link
Collaborator Author

These will need a lot of tests, but I'd like someone to take a quick look at it first before I put a bunch more work into it.

@gatk-bot
Copy link

Github actions tests reported job failures from actions build 8854148674
Failures in the following jobs:

Test Type JDK Job ID Logs
integration 17.0.6+10 8854148674.11 logs

Fixed warnings in long read tools that were pulled in.
@jonn-smith jonn-smith force-pushed the jts_repatriate_long_read_walkers branch from 5a47450 to fdf7612 Compare April 29, 2024 17:09
@jonn-smith jonn-smith closed this Apr 29, 2024
@jonn-smith jonn-smith deleted the jts_repatriate_long_read_walkers branch April 29, 2024 18:16
@gatk-bot
Copy link

Github actions tests reported job failures from actions build 8882582500
Failures in the following jobs:

Test Type JDK Job ID Logs
integration 17.0.6+10 8882582500.11 logs

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants