Use sampling for unexpected sequence reports #30
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tmgreen
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Feb 5, 2024
src/main/scala/org/broadinstitute/gpp/poolq3/process/UnexpectedSequenceTracker.scala
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tmgreen
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Feb 6, 2024
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To support processing of very large files, track unexpected sequences only for the first x% of unexpected sequences found for each column barcode. This is intended to reduce the amount of memory required to generate the unexpected sequence report. The report will contain the top N unexpected sequences (with exact counts) for the sample selected above.