Lk pd 2432 bgzip snaptools (#125)

* Added tabix and bgzip to snaptools docker

3rd-party-tools/snapatac2/Dockerfile

@@ -12,7 +12,9 @@ LABEL MAINTAINER="Broad Institute DSDE <[email protected]" \
 
 WORKDIR /usr/gitc
 
-RUN pip install cmake; \
+RUN apt-get update; \
+    apt-get install -y tabix; \
+    pip install cmake; \
     curl https://sh.rustup.rs -sSf | sh -s -- -y; \
     source "$HOME/.cargo/env"; \
     pip install snapatac2==${SNAPATAC2_VERSION}; \
@@ -23,6 +25,5 @@ RUN pip install cmake; \
     chmod +x /sbin/tini; \
     rm -r /usr/gitc/temp;
 
-
 # Set tini as default entrypoint
 ENTRYPOINT [ "/sbin/tini", "--" ]

3rd-party-tools/snapatac2/docker_build.sh

@@ -2,7 +2,7 @@
 set -e
 
 # Update version when changes to Dockerfile are made
-DOCKER_IMAGE_VERSION=1.0.3
+DOCKER_IMAGE_VERSION=1.0.4
 TIMESTAMP=$(date +"%s")
 DIR=$(cd $(dirname $0) && pwd)
 

3rd-party-tools/snapatac2/docker_versions.tsv

@@ -1,2 +1,3 @@
 us.gcr.io/broad-gotc-prod/snapatac2:1.0.2-2.2.0-1679678908
 us.gcr.io/broad-gotc-prod/snapatac2:1.0.3-2.3.0-1682089891
+us.gcr.io/broad-gotc-prod/snapatac2:1.0.4-2.3.1-1700590229