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1. quinlan-lab/bedqc quinlan-lab/bedqc Public

   BED QC tool (in the making)

   HTML 16 1

2. brentp/seqcover brentp/seqcover Public

   seqcover allows users to view coverage for hundreds of genes and dozens of samples

   Nim 50 4

3. covviz covviz Public

   Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata

   HTML 56 7

4. covdist covdist Public

   simple coverage distribution profile of aligned samples. useful for sequencing center feedback and topoffs.

   HTML 4 1

5. idplot idplot Public

   compare sequences to a shared root reference sequence.

   HTML 24 4

6. smoove-nf smoove-nf Public

   Nextflow implementation of the smoove workflow and other tools for SV calling and QC

   Python 12 2