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cEvo Public Resources

Public resources for our projects.

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  1. Quantification-of-the-spread-of-a-SARS-CoV-2-variant Quantification-of-the-spread-of-a-SARS-CoV-2-variant Public

    Python 10

  2. 2015-CeskyKrumlov-Phylodynamics 2015-CeskyKrumlov-Phylodynamics Public

    Český Krumlov 2015 - Phylodynamics

    R 2 2

  3. TreePrior-ClockRate TreePrior-ClockRate Public

    Scripts and data for "The impact of the tree prior on estimating clock rates during epidemic outbreaks" (PNAS 2018)

    R 2 3

  4. POUMM-GWAS POUMM-GWAS Public

    Scripts for "A phylogeny-aware GWAS framework to correct for heritable pathogen effects on infectious disease traits".

    TeX 2 1

  5. TreePar-MatlabPlugin TreePar-MatlabPlugin Public

    Matlab plugin for TreePar to calculate likelihood for age dependent extinction rates

    M 1

  6. Ebola-CurrentsOutbreaks2014 Ebola-CurrentsOutbreaks2014 Public

    Additional files for our paper "Insights into the early epidemic spread of Ebola in Sierra Leone provided by viral sequence data" submitted to PLOS Currents Outbreaks in September 2014.

    R

Repositories

Showing 10 of 11 repositories
  • marburg-virus Public

    Nextstrain build of the Orthomarburgvirus marburgense species taxon

    Python 0 0 0 0 Updated Jan 14, 2025
  • Python 10 GPL-3.0 0 0 0 Updated May 28, 2023
  • harvester-database-and-automation Public

    The database and automation infrastructure used in the Swiss SARS-CoV-2 Sequencing Consortium (S3C)

    Java 0 LGPL-3.0 0 0 0 Updated May 16, 2023
  • Grapevine-SARS-CoV-2-Introduction-Analysis Public

    Pipeline for estimating putatively independent introductions of SARS-CoV-2 from genome sequences.

    R 0 0 0 0 Updated Oct 27, 2022
  • POUMM-GWAS Public

    Scripts for "A phylogeny-aware GWAS framework to correct for heritable pathogen effects on infectious disease traits".

    TeX 2 1 0 0 Updated Jul 21, 2022
  • 0 0 0 0 Updated Jul 14, 2020
  • TreePrior-ClockRate Public

    Scripts and data for "The impact of the tree prior on estimating clock rates during epidemic outbreaks" (PNAS 2018)

    R 2 3 0 0 Updated Mar 18, 2018
  • 2015-GEMP-Phylodynamics Public

    Inferring epidemiological parameters from phylogenies with BEAST2

    0 1 0 0 Updated Sep 3, 2015
  • Ebola-CurrentsOutbreaks2014 Public

    Additional files for our paper "Insights into the early epidemic spread of Ebola in Sierra Leone provided by viral sequence data" submitted to PLOS Currents Outbreaks in September 2014.

    R 0 MIT 0 0 0 Updated Mar 26, 2015
  • 2015-CeskyKrumlov-Phylodynamics Public

    Český Krumlov 2015 - Phylodynamics

    R 2 2 0 0 Updated Feb 5, 2015