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gametic heterozygosity_observed #279

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Commits on Jul 18, 2019

  1. polysomic heterozygosity_observed cggh#277

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    timothymillar committed Jul 18, 2019
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  2. heterozygosity_observed hexaploid test case from Hardy 2016

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    timothymillar committed Jul 18, 2019
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  3. pep 8 corrections

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    timothymillar committed Jul 18, 2019
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  4. fix docstring for tetraploid example

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    timothymillar committed Jul 18, 2019
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Commits on Aug 2, 2020

  1. Initial implementation of heterozygosity_individual 

    This function is based on the definition in Hardy (2016)
"Population genetics of autopolyploids under a mixed mating
model and the estimation of selfing rate".
It calculates the 'level' of heterozygosity of individuals
in a consistant way across ploidy levels such that a diploid
always has a heterozygosity of 0 (hom) or 1 (het) and
a polyploid will always have a values from 0 (fully hom) to
1 (fully het).
    @timothymillar
    timothymillar committed Aug 2, 2020
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  2. Re-implement heterozygosity_observed using heterozygosity_individual. 

    This also enables using heterozygosity_observed with mixed-ploidy
data via the 'ploidy' argument.
    @timothymillar
    timothymillar committed Aug 2, 2020
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  3. Add heterozygosity_individual to init and add tests.

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    timothymillar committed Aug 2, 2020
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Commits on Aug 4, 2020

  1. Docstring example for heterozygosity_individual

    @timothymillar
    timothymillar committed Aug 4, 2020
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  2. Remove trailing whitespace

    @timothymillar
    timothymillar committed Aug 4, 2020
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  3. Docstring

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    timothymillar committed Aug 4, 2020
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  4. Flake8 whitespace

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    timothymillar committed Aug 4, 2020
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