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update with final publication.
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@uermel
uermel committed Jan 13, 2025
1 parent bd51743 commit fe939c2
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Showing 10 changed files with 20 additions and 16 deletions.
3 changes: 2 additions & 1 deletion ingestion_tools/dataset_configs/10426.yaml
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Expand Up @@ -41,7 +41,8 @@ datasets:
id: CL:0000010
name: cultured cell
cross_references: &id002
publications: 10.1101/2024.06.27.600657
publications: 10.1038/s41467-025-56045-z, 10.1101/2024.06.27.600657
related_database_entries: EMD-44921, EMD-44909, EMD-44922, EMD-46973
dataset_description: Michalak, Sun, Sochacki et al. 2024 unroofing manuscript
contains 10 grids. This is grid 1 of 10 and contains basal membranes of HSC3
cells. The cell line expresses EGFR-GFP as described in Panilla-Macua et al.
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3 changes: 2 additions & 1 deletion ingestion_tools/dataset_configs/10427.yaml
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Expand Up @@ -41,7 +41,8 @@ datasets:
id: CL:0000010
name: cultured cell
cross_references:
publications: 10.1101/2024.06.27.600657
publications: 10.1038/s41467-025-56045-z, 10.1101/2024.06.27.600657
related_database_entries: EMD-44921, EMD-44909, EMD-44922, EMD-46973
dataset_description: Michalak, Sun, Sochacki et al. 2024 unroofing manuscript
contains 10 grids. This is grid 2 of 10 and contains basal membranes of HSC3
cells. The cell line expresses EGFR-GFP as described in Panilla-Macua et al.
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3 changes: 2 additions & 1 deletion ingestion_tools/dataset_configs/10428.yaml
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Expand Up @@ -41,7 +41,8 @@ datasets:
id: CL:0000010
name: cultured cell
cross_references:
publications: 10.1101/2024.06.27.600657
publications: 10.1038/s41467-025-56045-z, 10.1101/2024.06.27.600657
related_database_entries: EMD-44921, EMD-44909, EMD-44922, EMD-46973
dataset_description: Michalak, Sun, Sochacki et al. 2024 unroofing manuscript
contains 10 grids. This is grid 3 of 10 and contains apical membranes of HSC3
cells. The cell line expresses EGFR-GFP as described in Panilla-Macua et al.
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3 changes: 2 additions & 1 deletion ingestion_tools/dataset_configs/10429.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -41,7 +41,8 @@ datasets:
id: CL:0000010
name: cultured cell
cross_references:
publications: 10.1101/2024.06.27.600657
publications: 10.1038/s41467-025-56045-z, 10.1101/2024.06.27.600657
related_database_entries: EMD-44921, EMD-44909, EMD-44922, EMD-46973
dataset_description: Michalak, Sun, Sochacki et al. 2024 unroofing manuscript
contains 10 grids. This is grid 4 of 10 and contains apical membranes of HSC3
cells. The cell line expresses EGFR-GFP as described in Panilla-Macua et al.
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4 changes: 2 additions & 2 deletions ingestion_tools/dataset_configs/10430.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -41,8 +41,8 @@ datasets:
id: CL:0000010
name: cultured cell
cross_references:
publications: 10.1101/2024.06.27.600657
related_database_entries: EMD-44921, EMD-44909, EMD-44922
publications: 10.1038/s41467-025-56045-z, 10.1101/2024.06.27.600657
related_database_entries: EMD-44921, EMD-44909, EMD-44922, EMD-46973
dataset_description: Michalak, Sun, Sochacki et al. 2024 unroofing manuscript
contains 10 grids. This is grid 5 of 10 and contains apical membranes of HEK293
Trex cells. The cell line is stably expressing Dynamin 1 (K44A)- GFP on a tetracycline
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4 changes: 2 additions & 2 deletions ingestion_tools/dataset_configs/10431.yaml
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Expand Up @@ -39,8 +39,8 @@ datasets:
id: CL:0000010
name: cultured cell
cross_references:
publications: 10.1101/2024.06.27.600657
related_database_entries: EMD-44921, EMD-44909, EMD-44922
publications: 10.1038/s41467-025-56045-z, 10.1101/2024.06.27.600657
related_database_entries: EMD-44921, EMD-44909, EMD-44922, EMD-46973
dataset_description: Michalak, Sun, Sochacki et al. 2024 unroofing manuscript
contains 10 grids. This is grid 6 of 10 and contains apical membranes of HEK293
Trex cells. The cell line is stably expressing Dynamin 1 (K44A)- GFP on a tetracycline
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4 changes: 2 additions & 2 deletions ingestion_tools/dataset_configs/10432.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -41,8 +41,8 @@ datasets:
id: CL:0000010
name: cultured cell
cross_references:
publications: 10.1101/2024.06.27.600657
related_database_entries: EMD-44921, EMD-44909, EMD-44922
publications: 10.1038/s41467-025-56045-z, 10.1101/2024.06.27.600657
related_database_entries: EMD-44921, EMD-44909, EMD-44922, EMD-46973
dataset_description: Michalak, Sun, Sochacki et al. 2024 unroofing manuscript
contains 10 grids. This is grid 7 of 10 and contains apical membranes of HEK293
cells. The cells are expressing FerriTag and GFP-FKBP-LCa (clathrin light chain)
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4 changes: 2 additions & 2 deletions ingestion_tools/dataset_configs/10433.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -41,8 +41,8 @@ datasets:
id: CL:0000010
name: cultured cell
cross_references:
publications: 10.1101/2024.06.27.600657
related_database_entries: EMD-44921, EMD-44909, EMD-44922
publications: 10.1038/s41467-025-56045-z, 10.1101/2024.06.27.600657
related_database_entries: EMD-44921, EMD-44909, EMD-44922, EMD-46973
dataset_description: Michalak, Sun, Sochacki et al. 2024 unroofing manuscript
contains 10 grids. This is grid 8 of 10 and contains apical membranes of HEK293
cells. The cells are expressing FerriTag and GFP-FKBP-LCa (clathrin light chain)
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4 changes: 2 additions & 2 deletions ingestion_tools/dataset_configs/10434.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -41,8 +41,8 @@ datasets:
id: CL:0000010
name: cultured cell
cross_references:
publications: 10.1101/2024.06.27.600657
related_database_entries: EMD-44921, EMD-44909, EMD-44922
publications: 10.1038/s41467-025-56045-z, 10.1101/2024.06.27.600657
related_database_entries: EMD-44921, EMD-44909, EMD-44922, EMD-46973
dataset_description: Michalak, Sun, Sochacki et al. 2024 unroofing manuscript
contains 10 grids. This is grid 9 of 10 and contains apical membranes of HEK293
cells. The cells are expressing FerriTag and Hip1R-GFP-FKBP off of plasmids. The
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4 changes: 2 additions & 2 deletions ingestion_tools/dataset_configs/10435.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -41,8 +41,8 @@ datasets:
id: CL:0000010
name: cultured cell
cross_references:
publications: 10.1101/2024.06.27.600657
related_database_entries: EMD-44921, EMD-44909, EMD-44922
publications: 10.1038/s41467-025-56045-z, 10.1101/2024.06.27.600657
related_database_entries: EMD-44921, EMD-44909, EMD-44922, EMD-46973
dataset_description: Michalak, Sun, Sochacki et al. 2024 unroofing manuscript
contains 10 grids. This is grid 10 of 10 and contains apical membranes of HEK293
cells. The cells are expressing FerriTag and Hip1R-GFP-FKBP off of plasmids. The
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