chore: release 2.1.2 (#214)

* Bump version: 2.1.1 → 2.1.2-rc.0

* update CHANGELOG

* Bump version: 2.1.2-rc.0 → 2.1.2-rc.1

* Bump version: 2.1.2-rc.1 → 2.1.2

.bumpversion.cfg

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 2.1.1
+current_version = 2.1.2
 commit = True
 parse = (?P<major>\d+)\.(?P<minor>\d+)\.(?P<patch>\d+)(?:-(?P<prerel>rc)\.(?P<prerelversion>\d+))?
 serialize = 

cellxgene_schema_cli/CHANGELOG.md

@@ -4,22 +4,29 @@ All notable changes to the python package `cellxgene-schema` are documented in t
 The format of this changelog is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [2.1.2] - 2022-04-13
+
+### Changed
+- Feature names and reference organims id's are added to `raw.var`
+- Duplicate genes with suffix "PAR_Y" are filtered
+- Correct eroneous gene names introduced in GENCODE v38
+
 ## [2.1.1] - 2022-01-27
 
 ### Changed
 - Gene reference files now have an extra column for gene length.
 - Gene reference files no longer have transcripts.
 - Improved CLI responsiveness in certain situations
 
-## [2.1.0] - 2021-11-12    
-### Added 
-- A check for convertibility to Seurat format. Prints warnings if conversion is not possible.      
+## [2.1.0] - 2021-11-12
+### Added
+- A check for convertibility to Seurat format. Prints warnings if conversion is not possible.
+
+## [2.0.4] - 2021-11-01
+
+### Added
 
-## [2.0.4] - 2021-11-01    
-
-### Added    
-
-- A check during raw data validation in `validate.Validator`. When both `adata.X` and `adata.raw.X` are present, but `adata.raw.X` contains non-integer values a warning is added.         
+- A check during raw data validation in `validate.Validator`. When both `adata.X` and `adata.raw.X` are present, but `adata.raw.X` contains non-integer values a warning is added.
 
 ## [2.0.3] - 2021-10-08
 ### Changed
@@ -43,7 +50,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### Added
 
-- All **MUST** requirements in [schema version 2.0.0](https://github.com/chanzuckerberg/single-cell-curation/blob/main/schema/2.0.0/corpora_schema.md) are strictly enforced. For failures, an error message is displayed and validation fails. 
+- All **MUST** requirements in [schema version 2.0.0](https://github.com/chanzuckerberg/single-cell-curation/blob/main/schema/2.0.0/corpora_schema.md) are strictly enforced. For failures, an error message is displayed and validation fails.
 - Some **STRONGLY RECOMMENDED** requirements in the schema version 2.0.0 are checked. Warnings are displayed when recommended best practices are not observed.
 - Pinned versions of ontology and feature references (see `./cellxgene_schema/ontology_files/`).
 - Downloader and parser for ontology and feature references (see `./scripts/`).
@@ -52,7 +59,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### Changed
 
-- `cellxgene-schema validate` validates schema version 2.0.0. The implementation is *from scratch*. 
+- `cellxgene-schema validate` validates schema version 2.0.0. The implementation is *from scratch*.
 - Ontology validation and label retrieval depend on downloaded references instead of the EBI Ontology Service (see `./cellxgene_schema/ontology.py`).
 - Gene/feature validation and label retrieval depend on downloaded references (see `./cellxgene_schema/ontology.py`).
 

cellxgene_schema_cli/setup.py

@@ -5,7 +5,7 @@
 
 setup(
     name="cellxgene-schema",
-    version="2.1.1",
+    version="2.1.2",
     url="https://github.com/chanzuckerberg/single-cell-curation",
     license="MIT",
     author="Chan Zuckerberg Initiative",