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Pull requests list

build(deps): Bump xcoo/clj-lint-action from 1.1.12 to 1.1.13 dependencies Pull requests that update a dependency file
#333 by dependabot bot was merged Mar 4, 2025
Explicitly install lein with setup-clojure for CI
#331 by athos was merged Jan 7, 2025 Loading…
@athos @alumi @r6eve
2
rANS (rans4x8) encoding support for CRAM block compression
#330 by athos was merged Jan 14, 2025 Loading…
@athos @alumi @niyarin
12
Add a function to read mate alignments enhancement
#329 by alumi was merged Jan 21, 2025 Loading…
@alumi @ToshimitsuArai
3
CRAM writer option for read name omission
#328 by athos was merged Nov 25, 2024 Loading…
@athos
3
Bump codecov/codecov-action from 4 to 5 dependencies Pull requests that update a dependency file
#327 by dependabot bot was merged Nov 18, 2024 Loading…
@alumi
4
Support for encoding non-detached mate records
#326 by athos was merged Nov 20, 2024 Loading…
@athos @alumi @ToshimitsuArai
3
SNV frequency-based substitution matrix construction for CRAM writer
#325 by athos was merged Oct 22, 2024 Loading…
@athos
6
Support reference embedding for CRAM writer
#324 by athos was merged Oct 15, 2024 Loading…
@athos
4
Support for delta encoding of AP data series for sorted CRAM files
#323 by athos was merged Oct 3, 2024 Loading…
@athos @alumi @niyarin
3
Fine-grained partition of CRAM containers and slices
#322 by athos was merged Aug 30, 2024 Loading…
@athos @alumi @ToshimitsuArai
3
Use XZ for LZMA compression in CRAM
#321 by athos was merged Aug 27, 2024 Loading…
@athos @alumi @matsutomo81
4
Block compression support for CRAM writer
#320 by athos was merged Aug 26, 2024 Loading…
@athos @alumi @r6eve
2
Refactor CRAM writer to organize encoding values into context maps
#319 by athos was merged Aug 20, 2024 Loading…
@athos @niyarin
3
CRAM tag dictionary construction at preprocessing phase
#318 by athos was merged Aug 9, 2024 Loading…
@athos @ToshimitsuArai
9
Support for CRAM index generation
#317 by athos was merged Aug 2, 2024 Loading…
@athos @matsutomo81
10
Add CRAM writer (alpha)
#313 by athos was merged Jul 22, 2024 Loading…
@athos @niyarin
5
Implement ITF-8/LTF-8 encoder for CRAM writer
#312 by athos was merged Jun 25, 2024 Loading…
@athos @alumi
2
Support for reading alignments in specific region without CRAI index file
#311 by athos was merged May 17, 2024 Loading…
@athos @alumi @niyarin
6
Update dependencies bug dependencies Pull requests that update a dependency file
#310 by alumi was merged May 13, 2024 Loading…
1
@athos @niyarin
4
Support for CRAM beta coding
#309 by athos was merged May 14, 2024 Loading…
@athos @alumi @r6eve
3
Automatic read name generation for CRAM records
#308 by athos was merged May 22, 2024 Loading…
@athos @alumi @ToshimitsuArai
6
Support reading CRAM files with embedded references
#307 by athos was merged May 22, 2024 Loading…
@athos @alumi @matsutomo81
11
Index-based random access for CRAM reader
#306 by athos was merged Apr 24, 2024 Loading…
@athos @alumi @niyarin
10
Misc performance improvements for CRAM reader
#304 by athos was merged Apr 8, 2024 Loading…
@athos @alumi @r6eve
3
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