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Make fidimag great again#138

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rpep wants to merge 50 commits intomastercomputationalmodelling/fidimag:masterfrom make-fidimag-great-againcomputationalmodelling/fidimag:make-fidimag-great-againCopy head branch name to clipboard

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Commits on May 9, 2019

• Port Fidimag to C++

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• Switch to C++ complex proper

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• Remove accidentally committed cython generated sources

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• Fix various tiny bugs which caused warnings in Pytest

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• Simplify setup.py by removing regex search for version, moving out some functions to new file tools.py (not setuptools.py because module named this)

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• Fix bug in tools.py with module_name not defined

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• Move micro C++ files to native directory and resolve duplicate function names

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• Move common and atomistic to native directory

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Commits on May 10, 2019

• Refactor all Python code so that tests pass with new extensions location

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• Fix linker bug on MacOS

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• Set Makefile to appropriate defaults for Linux

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• Pass through directly the CPPFLAGS argument to setup.py

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• Tweak some of the setup

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• Consolidate vector mathematics into a single C++ file native/c_vectormath.cpp. Make some of these external C++ declarations available in other modules by using a Cython pxd file, vectormath.pxd.

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• Add c_vectormath.h

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• Switch to using pragma once for header files, and replace multiple definitions of WIDE_PI constant with use of math library M_PIl

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• Add C++ Energy class

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• Updated Ubuntu version in Docker

  

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Commits on May 11, 2019

• Add constants file to avoid issues on macOS with M_PIl not being defined

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Commits on May 13, 2019

• Add initial Energy class implementation

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Commits on May 17, 2019

• Removed empty file

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• Implementing a Cython wrapper for the C++ energy class, only Exchange for now; ignored error in Makefile clean

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Commits on Jun 6, 2019

• Added test for new energy class wrapper

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Commits on Jun 7, 2019

• Fixed cython interface to c++ energy classes

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• Fixed bug in exchange class; problem was in the argument order in the test

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Commits on Jun 10, 2019

• Updated exchange class and started sim c++ class

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• Added micro sim cpp file

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Commits on Jun 11, 2019

• Added method to add interactions to sim C class using cython wrappers to c++ methods. Finished sim C class. Added some tests

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Commits on Jun 12, 2019

• Made energy class setup to depend on the micro sim class. Updated test. Moved exchange class functions to micro exch file

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• Added new micromagnetic Anisotropy and DMI energy classes

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• Implemented compute eff field in sim class. Simplified interactions array. Fixed circular dependency in sim and energy class headers

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Commits on Jun 14, 2019

• Added new driver

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Commits on Jul 29, 2019

• Starting implementation of micro driver

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Commits on May 19, 2021

• Setting micro driver class and sketching integrators

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Commits on May 20, 2021

• Implementing RK4 integrator

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Commits on May 21, 2021

• Removing RHS fun dependence on iterators to make it easy for Cython

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• Driver problem: pass RHS fun to integrator

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• Setting wrappers for C++ driver classes

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Commits on May 25, 2021

• Added static func to set up RHS func for the integrator

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• Using static variables to call integrator function

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Commits on May 26, 2021

• Refactored integrator with void pointers a-la-C, to allow any number of parameters

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Commits on May 27, 2021

• Templated integrator, now accepting extra parameters in a safer way. Added some documentation

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• Implemented micro driver in Cython wrapper

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• Testing setting the integrator

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Commits on May 31, 2021

• remove blat out of .cpp files; not reliable if add cpp sources

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• remove setting CC and CXX from Makefile; should always get from environment

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Commits on Jun 1, 2021

• Made dmdt vector in integrator

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• Refining integrator, made dmdt vector; removing old variables and comments

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Commits on Jan 26, 2022

• Started adding tests to integrators

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Commits on Jan 27, 2022

• Fixed test of integrator. Added cython wrapper

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