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Add AA consequences to sample variant CSV files #1

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m-bull opened this issue Mar 10, 2021 · 2 comments
Open

Add AA consequences to sample variant CSV files #1

m-bull opened this issue Mar 10, 2021 · 2 comments

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@m-bull
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m-bull commented Mar 10, 2021

Could use https://github.com/rpetit3/vcf-annotator for this.
@nickloman
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You can use the annotations in the YAML?

@m-bull
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m-bull commented Mar 10, 2021

CSV contains all of the detected variants from a sample, rather than just the ones that apply to variant types, so have to do this denovo really.

phw-asmith pushed a commit that referenced this issue Nov 11, 2021
@m-bull
Merge pull request #1 from m-bull/no_trim_terminal_N
9032f90 
Add no_trim_terminal_N option
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@nickloman @m-bull