Modern path handling #89
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Transform all path variables to the more modern `pathlib.Path` object. This helps with cross-platform compatibility and makes the code more readable. Some type annotations were also passed. Meant to be applied in conjunction with a move to Pydantic for configuration validation. NOTE: If cherry-picked, needs to be revised carefully as the commit is meant to be applied with a move to Pydantic. Fixes cryotools#81
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As described in #82
Fixes #81
Tests are passing on
python3.12locally.Further review by someone who knows the model well is definitely needed.