demo

test-demo.ipynb

@@ -0,0 +1,92 @@
+{
+ "cells": [
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "from alignmentfreegraph import AlignmentFreeGraph\n",
+    "db = AlignmentFreeGraph(configuration=\"credentials.json\")"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "db.query(\"MATCH ()-[r]->() RETURN COUNT(r) AS total_relationships\")"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "db.query(\"MATCH (n) RETURN COUNT(n) AS total_nodes\")"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "db.set_k(5)\n",
+    "ht = db.get_hashtable()\n",
+    "print(\"- Hash table with k=5\")\n",
+    "print(f\"- HashTable length: {len(ht)}\")\n",
+    "print(f\"- Number of paths: {len(set([arc for el in ht for arc in ht[el][1]]))}\")\n",
+    "ht"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "db.set_k(10)\n",
+    "ht = db.get_hashtable()\n",
+    "print(\"- Hash table with k=5\")\n",
+    "print(f\"- HashTable length: {len(ht)}\")\n",
+    "print(f\"- Number of paths: {len(set([arc for el in ht for arc in ht[el][1]]))}\")\n",
+    "ht\n",
+    "db.get_hashtable()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "test = \"GACCGAGACATTTATATAAC\"\n",
+    "db.sequence_from_hash(test)"
+   ]
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "base",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.10.12"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 2
+}