added soft ANTS for all species (no ANTS_prep)

davidmeunier79 · Jul 13, 2022 · 6fed8d2 · 6fed8d2
1 parent f4b7e0e
commit 6fed8d2
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Showing 3 changed files with 12 additions and 13 deletions.
diff --git a/.github/workflows/build_on_prerelease.yml b/.github/workflows/build_on_prerelease.yml
@@ -90,3 +90,10 @@ jobs:
             echo ""
 
             docker run -i -v /home/ubuntu/actions-runner/_work/macapype/macapype/macapype_CI:/data macatools/macapype:latest segment_pnh -data /data/macaque_prime-de/ -out /data/macaque_prime-de/results -soft ANTS_prep -species macaque -indiv /data/macaque_prime-de/indiv_params_segment_macaque.json -sub 032140 -ses 001
+
+            docker run -i -v /home/ubuntu/actions-runner/_work/macapype/macapype/macapype_CI:/data macatools/macapype:latest segment_pnh -data /data/macaque_prime-de/ -out /data/macaque_prime-de/results -soft ANTS -species macaque -indiv /data/macaque_prime-de/indiv_params_segment_macaque.json -sub 032140 -ses 001 -deriv -pad
+
+            docker run -i -v /home/ubuntu/actions-runner/_work/macapype/macapype/macapype_CI:/data macatools/macapype:latest segment_pnh -data /data/baboon-cerimed-adrien -out /data/baboon-cerimed-adrien/results -soft ANTS -species baboon -indiv /data/baboon-cerimed-adrien/indiv_params_segment_baboon_long_single_prep.json -sub Odor -ses T1 -deriv -pad
+
+            docker run -i -v /home/ubuntu/actions-runner/_work/macapype/macapype/macapype_CI:/data macatools/macapype:latest segment_pnh -data /data/marmo-marmobrain -out /data/marmo-marmobrain/results -soft ANTS -species marmo -indiv /data/marmo-marmobrain/indiv_params_segment_marmo.json -sub 8034 -ses 01 -deriv -pad
+
diff --git a/.github/workflows/build_on_release.yml b/.github/workflows/build_on_release.yml
@@ -67,7 +67,7 @@ jobs:
   run-test:
     name: Running all existing pipelines in macapype_CI.zip
     needs: docker-build
-    runs-on: ubuntu-latest
+    runs-on: self-hosted
     steps:
       - uses: actions/checkout@v2
       - name: Pull latest docker image
@@ -88,17 +88,9 @@ jobs:
             ls macapype_CI/macaque_prime-de
             echo ""
 
-            docker run -i -v /home/runner/work/macapype/macapype/macapype_CI:/data macatools/macapype:latest segment_pnh -data /data/macaque_prime-de/ -out /data/macaque_prime-de/results -soft ANTS_prep -species macaque -indiv /data/macaque_prime-de/indiv_params_segment_macaque.json -sub 032140 -ses 001
-
-            docker run -i -v /home/runner/work/macapype/macapype/macapype_CI:/data macatools/macapype:latest segment_pnh -data /data/macaque_prime-de/ -out /data/macaque_prime-de/results -soft ANTS_prep -species macaque -sub 032140 -ses 001
-
-            docker run -i -v /home/runner/work/macapype/macapype/macapype_CI:/data macatools/macapype:latest segment_pnh -data /data/macaque_prime-de/ -out /data/macaque_prime-de/results -soft ANTS_T1_prep -species macaque -indiv /data/macaque_prime-de/indiv_params_segment_macaque.json -sub 032140 -ses 001
-
-            docker run -i -v /home/runner/work/macapype/macapype/macapype_CI:/data macatools/macapype:latest segment_pnh -data /data/macaque_prime-de/ -out /data/macaque_prime-de/results -soft ANTS_T1_prep -species macaque -sub 032140 -ses 001
-
-            docker run -i -v /home/runner/work/macapype/macapype/macapype_CI:/data macatools/macapype:latest segment_pnh -data /data/baboon-cerimed-adrien -out /data/baboon-cerimed-adrien/results -soft ANTS_prep -species baboon -indiv /data/baboon-cerimed-adrien/indiv_params_segment_baboon_long_single_prep.json -sub Odor -ses T1 -deriv
+            docker run -i -v /home/ubuntu/actions-runner/_work/macapype/macapype/macapype_CI:/data macatools/macapype:latest segment_pnh -data /data/macaque_prime-de/ -out /data/macaque_prime-de/results -soft ANTS -species macaque -indiv /data/macaque_prime-de/indiv_params_segment_macaque.json -sub 032140 -ses 001 -deriv -pad
 
-            docker run -i -v /home/runner/work/macapype/macapype/macapype_CI:/data macatools/macapype:latest segment_pnh -data /data/baboon-cerimed-adrien -out /data/baboon-cerimed-adrien/results -soft ANTS_prep -species baboon -indiv /data/baboon-cerimed-adrien/indiv_params_segment_baboon_multi.json -sub Odor -ses T1 -deriv
+            docker run -i -v /home/ubuntu/actions-runner/_work/macapype/macapype/macapype_CI:/data macatools/macapype:latest segment_pnh -data /data/baboon-cerimed-adrien -out /data/baboon-cerimed-adrien/results -soft ANTS -species baboon -indiv /data/baboon-cerimed-adrien/indiv_params_segment_baboon_long_single_prep.json -sub Odor -ses T1 -deriv -pad
 
-            docker run -i -v /home/runner/work/macapype/macapype/macapype_CI:/data macatools/macapype:latest segment_pnh -data /data/marmo-marmobrain -out /data/marmo-marmobrain/results -soft ANTS_prep -species marmo -indiv /data/marmo-marmobrain/indiv_params_segment_marmo.json -sub 8034 -ses 01 -deriv
+            docker run -i -v /home/ubuntu/actions-runner/_work/macapype/macapype/macapype_CI:/data macatools/macapype:latest segment_pnh -data /data/marmo-marmobrain -out /data/marmo-marmobrain/results -soft ANTS -species marmo -indiv /data/marmo-marmobrain/indiv_params_segment_marmo.json -sub 8034 -ses 01 -deriv -pad
 
diff --git a/macapype/_version.py b/macapype/_version.py
@@ -1 +1 @@
-__version__ = '0.3.1.1-dev1'
+__version__ = '0.3.1.1-dev2'