only marmo, testing with forcing nibabel=3.2.2 works better

davidmeunier79 · Jul 18, 2022 · c5e6027 · c5e6027
1 parent c8fb7b7
commit c5e6027
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Showing 3 changed files with 2 additions and 6 deletions.
diff --git a/.github/workflows/build_on_prerelease.yml b/.github/workflows/build_on_prerelease.yml
@@ -89,10 +89,6 @@ jobs:
             ls macapype_CI/macaque_prime-de
             echo ""
 
-            docker run -i -v /home/ubuntu/actions-runner/_work/macapype/macapype/macapype_CI:/data macatools/macapype:latest segment_pnh -data /data/macaque_prime-de/ -out /data/macaque_prime-de/results -soft ANTS -species macaque -indiv /data/macaque_prime-de/indiv_params_segment_macaque.json -sub 032140 -ses 001 -deriv -pad
-
-            docker run -i -v /home/ubuntu/actions-runner/_work/macapype/macapype/macapype_CI:/data macatools/macapype:latest segment_pnh -data /data/baboon-cerimed-adrien -out /data/baboon-cerimed-adrien/results -soft ANTS -species baboon -indiv /data/baboon-cerimed-adrien/indiv_params_segment_baboon_long_single_prep.json -sub Odor -ses T1 -deriv -pad
-
             docker run -i -v /home/ubuntu/actions-runner/_work/macapype/macapype/macapype_CI:/data macatools/macapype:latest segment_pnh -data /data/marmo-marmobrain -out /data/marmo-marmobrain/results -soft ANTS -species marmo -indiv /data/marmo-marmobrain/indiv_params_segment_marmo.json -sub 8034 -ses 01 -deriv -pad
 
       - name: Cleaning dataset

diff --git a/macapype/_version.py b/macapype/_version.py
@@ -1 +1 @@
-__version__ = '0.3.1.1-dev7'
+__version__ = '0.3.1.1-dev8'
diff --git a/setup.py b/setup.py
@@ -6,7 +6,7 @@
 
 
 required_packages=[
-    "nipype", "nilearn", "networkx", "pybids", "scikit-image", "nibabel", "numpy",
+    "nipype", "nilearn", "networkx", "pybids", "scikit-image", "nibabel==3.2.2", "numpy",
     "brain-slam"]
 
 verstr = "unknown"