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@deepomicslab

DeepOmics Lab

Focus on Bioinformatics Toolkits Development
README.md

Hi there 👋

Welcome to DeepomicsLab!

Popular repositories Loading

  1. GCNFrame GCNFrame Public

    This is a python package for genomics study with a GCN framework.

    Python 39 7

  2. SpecHLA SpecHLA Public

    SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read…

    C++ 37 9

  3. DeepHost DeepHost Public

    This is the repository for DeepHost, a phage host prediction tool.

    Python 17

  4. SpecHap SpecHap Public

    C++ 12 3

  5. LocalHGT LocalHGT Public

    Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.

    Python 11 1

  6. SeCNV SeCNV Public

    This is the repository for SeCNV, a single cell copy number profiling tool.

    Python 10 2

Repositories

Showing 10 of 57 repositories
  • mrnadesign_web Public
    deepomicslab/mrnadesign_web’s past year of commit activity
    Vue 0 0 0 0 Updated Nov 17, 2024
  • mrnadesign_api Public
    deepomicslab/mrnadesign_api’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 17, 2024
  • TCREmbedding Public
    deepomicslab/TCREmbedding’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Nov 15, 2024
  • SPIDER Public
    deepomicslab/SPIDER’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Nov 1, 2024
  • SPIDER-paper Public
    deepomicslab/SPIDER-paper’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 30, 2024
  • DeepTAPE-1.0 Public

    DeepTAPE is an advanced deep learning tool designed to provide reference diagnostics for SLE, leveraging pre-trained models and supporting custom training within its framework.

    deepomicslab/DeepTAPE-1.0’s past year of commit activity
    Python 0 0 0 0 Updated Oct 25, 2024
  • STAGUE Public
    deepomicslab/STAGUE’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Oct 22, 2024
  • AlphaTalk Public
    deepomicslab/AlphaTalk’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 21, 2024
  • StrInt Public
    deepomicslab/StrInt’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 21, 2024
  • crustdb_web Public
    deepomicslab/crustdb_web’s past year of commit activity
    Vue 0 0 0 0 Updated Oct 11, 2024
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