01_database_add_data.py

from scripts import import_crustdb_main, import_slice, import_publication, import_details, import_celltype, import_topology, import_craft_task
from datetime import timedelta
import datetime

import Phage_api.settings_local as local_settings


def get_current_datetime():
    cur = datetime.datetime.now() + timedelta(hours=8)
    return cur.strftime("%Y-%m-%d %H:%M:%S")


def log(log_str):
    f = open(local_settings.TASKLOG+"additional_scripts/" +
             "01_database_add_data.log", "a")
    f.write(get_current_datetime() + log_str)
    f.close()

# # ======= Remember to use 06_check_convergence_fail.ipynb to check =======

# import_crustdb_main.add_data()
# log(" [completed] scripts.import_crustdb_main\n")

# import_details.add_data()
# log(" [completed] scripts.import_details\n")

# # ======= Remember to update workspace/crustdb_database/main/datasets.json =======
# import_publication.add_data()
# log(" [completed] scripts.import_publication\n")

# # ======= Remember to update crustdb_api/slice/serializers.py adata_map =======
# import_slice.add_data()
# log(" [completed] scripts.import_slice\n")

# import_celltype.add_data()
# log(" [completed] scripts.import_celltype\n")

# # ======= 1. Remenber to maintain 08_networkx_graph_parentchild_relation.ipynb before adding topology/graph/general_node =======
# # ======= 2. Remenber to maintain 09_go_vis.ipynb before adding topology/graph/general_node =======
# # ======= 3. Remenber to maintain 07_check_topology_notexist.ipynb before adding topology/graph/general_node/ =======
# import_topology.add_data()
# log(" [completed] scripts.import_topology, graph, general_node\n")

# import_craft_task.add_data()
# log(" [completed] scripts.import_craft_task \n")