Fixed bug resource location not passed to cello.predict in cello_predict

deweylab · Jun 24, 2021 · bc2192a · bc2192a
1 parent af3303a
commit bc2192a
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Showing 2 changed files with 7 additions and 4 deletions.
diff --git a/cello/cello_predict.py b/cello/cello_predict.py
@@ -174,7 +174,8 @@ def main():
         cell_to_clust=cell_to_cluster,
         log_dir=log_dir,
         res=1.0,
-        remove_anatomical_subterms=remove_anatomical_subterms
+        remove_anatomical_subterms=remove_anatomical_subterms,
+        rsrc_loc=rsrc_loc
     )
 
     # Convert to human-readable ontology terms
@@ -216,7 +217,8 @@ def run_cello(
         cell_to_clust=None,
         log_dir=None,
         res=1.0,
-        remove_anatomical_subterms=None
+        remove_anatomical_subterms=None,
+        rsrc_loc=None
     ):
     # Get units into log(TPM+1)
     if assay == FULL_LENGTH_ASSAY:
@@ -257,7 +259,8 @@ def run_cello(
         algo=algo,
         clust_key=clust_key,
         log_dir=log_dir,
-        remove_anatomical_subterms=remove_anatomical_subterms
+        remove_anatomical_subterms=remove_anatomical_subterms,
+        rsrc_loc=rsrc_loc
     )
 
     return results_df, finalized_binary_results_df, ms_results_df

diff --git a/setup.py b/setup.py
@@ -24,7 +24,7 @@
 
 setup(
     name="cello_classify",
-    version="2.0.1",
+    version="2.0.3",
     description="CellO",
     author="Matthew N. Bernstein",
     author_email="[email protected]",