re-run pipeline

dms-vep · Dec 28, 2024 · fe3fe86 · fe3fe86
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diff --git a/docs/htmls/220210_vs_220302_comparison_by_region_diffs.html b/docs/htmls/220210_vs_220302_comparison_by_region_diffs.html
diff --git a/docs/htmls/220210_vs_220302_comparison_by_region_diffs_corr.html b/docs/htmls/220210_vs_220302_comparison_by_region_diffs_corr.html
diff --git a/docs/htmls/220210_vs_220302_comparison_diffs.html b/docs/htmls/220210_vs_220302_comparison_diffs.html
diff --git a/docs/htmls/220210_vs_220302_comparison_diffs_corr.html b/docs/htmls/220210_vs_220302_comparison_diffs_corr.html
diff --git a/docs/htmls/summary_of_all_phenotypes_faceted.html b/docs/htmls/summary_of_all_phenotypes_faceted.html
diff --git a/docs/htmls/summary_of_all_phenotypes_overlaid.html b/docs/htmls/summary_of_all_phenotypes_overlaid.html
diff --git a/docs/htmls/summary_of_just_antibodies_faceted.html b/docs/htmls/summary_of_just_antibodies_faceted.html
diff --git a/docs/htmls/summary_of_just_antibodies_overlaid.html b/docs/htmls/summary_of_just_antibodies_overlaid.html
diff --git a/docs/index.html b/docs/index.html
@@ -312,6 +312,13 @@ <h4 id="summary-of-all-phenotypes">summary of all phenotypes</h4>
 <li><a href="https://github.com/dms-vep/dms-vep-pipeline-3/blob/main/test_example/results/summaries/summary_of_all_phenotypes.csv">CSV summarizing results</a></li>
 <li><a href="https://github.com/dms-vep/dms-vep-pipeline-3/blob/main/test_example/results/summaries/summary_of_all_phenotypes_per_antibody_escape.csv">CSV summarizing per-antibody results</a></li>
 </ul>
+<h4 id="summary-of-just-antibodies">summary of just antibodies</h4>
+<ul>
+<li><a href="htmls/summary_of_just_antibodies_overlaid.html">Summary plot (escape overlaid)</a></li>
+<li><a href="htmls/summary_of_just_antibodies_faceted.html">Summary plot (escape faceted)</a></li>
+<li><a href="https://github.com/dms-vep/dms-vep-pipeline-3/blob/main/test_example/results/summaries/summary_of_just_antibodies.csv">CSV summarizing results</a></li>
+<li><a href="https://github.com/dms-vep/dms-vep-pipeline-3/blob/main/test_example/results/summaries/summary_of_just_antibodies_per_antibody_escape.csv">CSV summarizing per-antibody results</a></li>
+</ul>
 <h4 id="summary-of-just-entry-and-binding">summary of just entry and binding</h4>
 <ul>
 <li><a href="htmls/summary_of_just_entry_and_binding_overlaid.html">Summary plot</a></li>

diff --git a/docs/notebooks/analyze_func_scores.html b/docs/notebooks/analyze_func_scores.html
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