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Updated pom.xml, so that the local non-maven libs work as local repositories without the need for local_maven-repo.sh; project is now built with mvn clean compile verify
Updated assembly.xml to use relative pathnames, as per warnings during maven build
Refactored BiGGId.java - both constructors should now have the same behavior
Added a basic contract class for BiGGDB.java
Bug fixes:
Solved a bug when changing the identifier of reactions that have subsystem information attached, it is also necessary to update the reference from the member element to the updated reaction
Added missing G prefix, fixed R_EX and R_DM prefix, which where a letter to short previously, in BiGGId.java