Remove one numpy nan to see if pip install fails elsewhere #23
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| name: CI_WISDEM | |
| # We run CI on push commits and pull requests on all branches | |
| on: [push, pull_request] | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| build_conda: | |
| name: Conda Build-Test (${{ matrix.os }} Python ${{ matrix.python-version }}) | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| strategy: | |
| fail-fast: False | |
| matrix: | |
| os: [ubuntu-latest, macos-13, windows-latest] | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| steps: | |
| - name: checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Install conda/mamba | |
| uses: conda-incubator/setup-miniconda@v2 | |
| # https://github.com/marketplace/actions/setup-miniconda | |
| with: | |
| # To use mamba, uncomment here, comment out the miniforge line | |
| #mamba-version: "*" | |
| miniforge-version: "latest" | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: environment.yml | |
| activate-environment: test | |
| auto-activate-base: false | |
| # Install dependencies of WEIS specific to ubuntu | |
| - name: Add dependencies ubuntu specific | |
| if: false == contains( matrix.os, 'windows') | |
| run: | | |
| conda install -y petsc4py gfortran | |
| # Install dependencies of WISDEM specific to windows | |
| - name: Add dependencies windows specific | |
| if: contains( matrix.os, 'windows') | |
| run: | | |
| conda install -y m2w64-toolchain libpython | |
| - name: Debug config | |
| run: | | |
| conda list | |
| which -a gfortran | |
| which pip | |
| - name: Install WISDEM with setup | |
| run: | | |
| pip install --no-build-isolation --no-deps -e . -v | |
| # Debugging session | |
| #- name: Setup tmate session | |
| # uses: mxschmitt/action-tmate@v3 | |
| - name: Run all tests | |
| if: contains( matrix.os, 'ubuntu') | |
| run: | | |
| pytest -p no:warnings --disable-warnings --cov=wisdem | |
| - name: Limited test for non Linux | |
| if: false == contains( matrix.os, 'ubuntu') | |
| run: | | |
| cd wisdem/test/test_gluecode | |
| pytest -p no:warnings --disable-warnings test_g* | |
| # Run coveralls | |
| - name: Run coveralls | |
| if: contains( matrix.os, 'ubuntu') && contains( matrix.python-version, '3.11') | |
| #uses: coverallsapp/github-action@v2 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| coveralls --service=github | |
| build_pip: | |
| name: Pip Build-Test (${{ matrix.os }} Python ${{ matrix.python-version }}) | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| strategy: | |
| fail-fast: False | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-13] #mac-13 intel, mac-latest is arm | |
| python-version: ["3.11"] | |
| steps: | |
| - name: Setup GNU Fortran | |
| if: false == contains( matrix.os, 'windows') | |
| uses: awvwgk/setup-fortran@v1 | |
| - name: Install compiler | |
| if: false == contains( matrix.os, 'windows') | |
| id: install_cc | |
| uses: rlalik/setup-cpp-compiler@master | |
| with: | |
| compiler: clang | |
| - name: Install mingw-w64 on Windows | |
| if: contains( matrix.os, 'windows') | |
| uses: msys2/setup-msys2@v2 | |
| with: | |
| path-type: inherit | |
| install: | | |
| mingw-w64-x86_64-gcc | |
| mingw-w64-x86_64-gcc-fortran | |
| - name: checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| id: cp | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| update-environment: true | |
| - name: Set compilers | |
| if: false == contains( matrix.os, 'windows') | |
| run: | | |
| echo "CC=${{ steps.install_cc.outputs.cc }}" >> $GITHUB_ENV | |
| echo "CXX=${{ steps.install_cc.outputs.cxx }}" >> $GITHUB_ENV | |
| - name: Install WISDEM with setup | |
| env: | |
| MESON_ARGS: "-Dpython_target=${{ steps.cp.outputs.python-path }}" | |
| run: | | |
| '${{ steps.cp.outputs.python-path }}' -m pip install --upgrade pip install pytest numpy | |
| '${{ steps.cp.outputs.python-path }}' -m pip install -v . | |
| - name: Limited test | |
| run: | | |
| cd wisdem/test/test_gluecode | |
| pytest -p no:warnings --disable-warnings test_g* |