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Batch adding organisms and cell lines needed for the Causal links network (SbD4Nano) #666

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merged 7 commits into from
Apr 10, 2024
Merged

Batch adding organisms and cell lines needed for the Causal links network (SbD4Nano) #666

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265760c
Added Daphnia
jmillanacosta Mar 22, 2024
2823032
Added mouse
jmillanacosta Mar 22, 2024
0c859ea
Change to NCBI mouse, add strain C57BL/6
jmillanacosta Apr 9, 2024
f7b30ff
Removed mouse from SIO
jmillanacosta Apr 9, 2024
9b86897
E coli
jmillanacosta Apr 9, 2024
5ff2227
Update ncit-ext.owl
jmillanacosta Apr 9, 2024
9740672
Added several cell and organism terms, linked through bao: is derived…
jmillanacosta Apr 10, 2024
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1 change: 1 addition & 0 deletions config/efo.iris
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Expand Up @@ -6,3 +6,4 @@
+(http://www.ebi.ac.uk/efo/EFO_0002694):http://www.ebi.ac.uk/efo/EFO_0000487 exposure
+(http://purl.obolibrary.org/obo/BFO_0000019):http://www.ebi.ac.uk/efo/EFO_0000399 developmental stage
+(http://www.ebi.ac.uk/efo/EFO_0000399):http://www.ebi.ac.uk/efo/EFO_0001272 adult;adult stage
+(http://purl.enanomapper.org/onto/ENM_0000113):http://purl.obolibrary.org/obo/NCBITaxon_35525 Daphnia magna
6 changes: 6 additions & 0 deletions config/ncit.iris
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Expand Up @@ -110,3 +110,9 @@
+(http://purl.obolibrary.org/obo/UO_0000180):http://purl.obolibrary.org/obo/NCIT_C42576 Kilogram per Cubic Meter
+(http://purl.bioontology.org/ontology/npo#NPO_199):http://purl.obolibrary.org/obo/NCIT_C62365 Nanocomposite):http://purl.obolibrary.org/obo/NCIT_C62365 Nanocomposite
+(http://purl.obolibrary.org/obo/PATO_0000049):http://purl.obolibrary.org/obo/NCIT_C184706 fluorescence intensity
+(http://purl.obolibrary.org/obo/OBI_0100026):http://purl.obolibrary.org/obo/NCIT_C14238 mouse
+(http://purl.obolibrary.org/obo/NCIT_C14238):http://purl.obolibrary.org/obo/NCIT_C14424 C57BL/6
+(http://purl.obolibrary.org/obo/OBI_0100026):http://purl.obolibrary.org/obo/NCIT_C14206 E coli
+(http://purl.obolibrary.org/obo/OBI_0100026):http://purl.obolibrary.org/obo/NCIT_C14225 Human
+(http://purl.obolibrary.org/obo/OBI_0100026):http://purl.obolibrary.org/obo/NCIT_C160998 Rat
+(http://purl.obolibrary.org/obo/CL_0000010):http://purl.obolibrary.org/obo/NCIT_C20222 Rat cell line
3 changes: 2 additions & 1 deletion enanomapper-dev.owl
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Expand Up @@ -52,7 +52,8 @@
<owl:imports rdf:resource="http://enanomapper.github.io/ontologies/internal-dev/obi-ext.owl"/>
<owl:imports rdf:resource="http://enanomapper.github.io/ontologies/internal-dev/pato-ext.owl"/>
<owl:imports rdf:resource="http://enanomapper.github.io/ontologies/internal-dev/wikidata.owl"/>
<owl:imports rdf:resource="http://enanomapper.github.io/ontologies/internal-dev/go-ext.owl"/>
<owl:imports rdf:resource="http://enanomapper.github.io/ontologies/internal-dev/go-ext.owl"/>
<owl:imports rdf:resource="http://enanomapper.github.io/ontologies/internal-dev/efo-ext.owl"/>
<owl:imports rdf:resource="http://enanomapper.github.io/ontologies//enanomapper-auto-dev.owl"/>
<owl:versionInfo>11.0-SNAPSHOT</owl:versionInfo>
<dc:contributor>The eNanoMapper Consortium</dc:contributor>
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72 changes: 72 additions & 0 deletions internal-dev/efo-ext.owl
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@@ -0,0 +1,72 @@
<?xml version="1.0"?>
<rdf:RDF xmlns="http://purl.enanomapper.net/onto/internal/efo-ext.owl#"
xml:base="http://purl.enanomapper.net/onto/internal/efo-ext.owl"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:dc="http://purl.org/dc/elements/1.1/">

<owl:Ontology rdf:about="http://enanomapper.github.io/ontologies/internal/efo-ext.owl">
<dc:contributor>Javier Millan Acosta</dc:contributor>
<dc:license>CC-BY 4.0 https://creativecommons.org/licenses/by/4.0/</dc:license>
</owl:Ontology>

<!-- http://www.ebi.ac.uk/efo/EFO_0002887 -->


<owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_0002887">
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://www.bioassayontology.org/bao#BAO_0090006"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCIT_C14238"/>
</owl:Restriction>
</rdfs:subClassOf>
</owl:Class>

<!-- http://www.ebi.ac.uk/efo/EFO_0002888 -->


<owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_0002888">
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://www.bioassayontology.org/bao#BAO_0090006"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCIT_C14225"/>
</owl:Restriction>
</rdfs:subClassOf>
</owl:Class>

<!-- http://www.ebi.ac.uk/efo/EFO_0001089 -->


<owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_0001089">
<rdfs:subClassOf rdf:resource="http://www.ebi.ac.uk/efo/EFO_0002888"/>
</owl:Class>

<!-- http://www.ebi.ac.uk/efo/EFO_0002936 -->
<owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_0002936">
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://www.bioassayontology.org/bao#BAO_0090006"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCIT_C160998"/>
</owl:Restriction>
</rdfs:subClassOf>
</owl:Class>

<!-- http://www.ebi.ac.uk/efo/EFO_0002779 -->
<owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_0002779">
<rdfs:subClassOf rdf:resource="http://www.ebi.ac.uk/efo/EFO_0002888"/>
</owl:Class>

<!-- http://purl.obolibrary.org/obo/BTO_0000018 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BTO_0000018">
<rdfs:subClassOf rdf:resource="http://www.ebi.ac.uk/efo/EFO_0002888"/>
</owl:Class>

<!-- http://www.ebi.ac.uk/efo/EFO_0001193 -->
<owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_0001193">
<rdfs:subClassOf rdf:resource="http://www.ebi.ac.uk/efo/EFO_0002888"/>
</owl:Class>
</rdf:RDF>
29 changes: 29 additions & 0 deletions internal-dev/ncit-ext.owl
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Expand Up @@ -21,4 +21,33 @@
<rdfs:label xml:lang="en">Pulmonary instillation</rdfs:label>
</owl:Class>

<!-- http://purl.enanomapper.net/onto/ENM_2659304 -->

<owl:Class rdf:about="http://purl.enanomapper.net/onto/ENM_2659304">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCIT_C14238"/>
<rdfs:label xml:lang="en">HsdOla:TO mouse</rdfs:label>
</owl:Class>

<!-- http://www.ebi.ac.uk/efo/EFO_0002888 -->
<owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_0002888">
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://www.bioassayontology.org/bao#BAO_0090006"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCIT_C14238"/>
</owl:Restriction>
</rdfs:subClassOf>
</owl:Class>

<!-- http://purl.obolibrary.org/obo/NCIT_C20222 -->


<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCIT_C20222">
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://www.bioassayontology.org/bao#BAO_0090006"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCIT_C160998"/>
</owl:Restriction>
</rdfs:subClassOf>
</owl:Class>

</rdf:RDF>
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