v1.2.0

Added

• --override_basecaller_cfg parameter for cases where automatic basecall model detection fails or users wish to override the automatic choice.

Removed

• The --medaka_consensus_model parameter as the appropriate Medaka model is now automatically determined from the input data.
• The now redundant --basecaller_cfg parameter as its value is now automatically detected from the input data on a per-sample basis.

Changed

• Updated Medaka to v1.12.0
• Reconciled workflow with wf-template v5.1.4