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epifluidlab

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  1. FinaleToolkit FinaleToolkit Public

    FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.

    Python 20 7

  2. cragr cragr Public

    R package for CRAG

    R 11 4

  3. FinaleMe FinaleMe Public

    Java 9 2

  4. CRAG CRAG Public

    De novo characterization of cell-free DNA fragmentation hotspots

    MATLAB 5 2

  5. finaledb_workflow finaledb_workflow Public

    Python 4 2

  6. finaledb_portal finaledb_portal Public

    JavaScript 3 1

Repositories

Showing 10 of 23 repositories
  • CRAGR_v2 Public

    CRAGR_v2 is a CRAGR pipeline that handles hotspots calling for multiple replicates using the irreproducible discovery rate (IDR).

    epifluidlab/CRAGR_v2’s past year of commit activity
    R 1 MIT 0 0 0 Updated Feb 28, 2025
  • bedtorch Public Forked from haizi-zh/bedtorch

    Fast and native toolsuite for BED file manipulation

    epifluidlab/bedtorch’s past year of commit activity
    HTML 0 5 0 0 Updated Feb 27, 2025
  • cragr Public

    R package for CRAG

    epifluidlab/cragr’s past year of commit activity
    R 11 4 0 1 Updated Feb 17, 2025
  • FinaleToolkit Public

    FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.

    epifluidlab/FinaleToolkit’s past year of commit activity
    Python 20 MIT 7 1 0 Updated Feb 17, 2025
  • finaletoolkit_workflow Public

    Extract Finaletoolkit features from several files

    epifluidlab/finaletoolkit_workflow’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Feb 16, 2025
  • MethylSeqDesign Public Forked from liupeng2117/MethylSeqDesign

    MethylSeqDesign is a framework for power calculation and study design of Methy-Seq experiments by utilizing information from pilot data.

    epifluidlab/MethylSeqDesign’s past year of commit activity
    R 0 1 0 0 Updated Feb 11, 2025
  • POWEREDBiSeq Public Forked from dorotheavellame/POWEREDBiSeq

    Scripts for POWEREDBiSeq, a tool which estimates power in bisulfite sequencing studies

    epifluidlab/POWEREDBiSeq’s past year of commit activity
    R 0 1 0 0 Updated Feb 10, 2025
  • FinaleMe Public
    epifluidlab/FinaleMe’s past year of commit activity
    Java 9 MIT 2 3 0 Updated Oct 30, 2024
  • finaletoolkit-docs Public
    epifluidlab/finaletoolkit-docs’s past year of commit activity
    HTML 0 0 0 0 Updated Oct 10, 2024
  • epifluidlab.github.io Public
    epifluidlab/epifluidlab.github.io’s past year of commit activity
    HTML 2 BSD-3-Clause 0 0 3 Updated Sep 5, 2024
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