Use checkpointed mesh in defining parameters for KGO checking tests #1750
Workflow file for this run
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| name: Build Gusto | |
| on: | |
| # Push to main or PR | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| schedule: | |
| # * is a special character in YAML so you have to quote this string | |
| # Scheduled build at 0330 UTC on Monday mornings to detect bitrot. | |
| - cron: '30 3 * * 1' | |
| concurrency: | |
| # Cancels jobs running if new commits are pushed | |
| group: > | |
| ${{ github.workflow }}- | |
| ${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build: | |
| name: "Build Gusto" | |
| # The type of runner that the job will run on | |
| runs-on: [self-hosted, Linux] | |
| # The docker container to use. | |
| container: | |
| image: firedrakeproject/firedrake-vanilla-default:latest | |
| env: | |
| # Make Gusto output logging information, this will *not* be printed to | |
| # the terminal because pytest will capture it. Instead it is written to | |
| # the file specified by '--log-file'. | |
| GUSTO_PARALLEL_LOG: CONSOLE | |
| PYOP2_CFLAGS: -O0 | |
| # Make sure that tests with >4 processes are not silently skipped | |
| PYTEST_MPI_MAX_NPROCS: 4 | |
| EXTRA_PYTEST_ARGS: --durations=100 --timeout=3600 --timeout-method=thread -o faulthandler_timeout=3660 --verbose gusto-repo/unit-tests gusto-repo/integration-tests gusto-repo/examples | |
| steps: | |
| - name: Fix HOME | |
| # For unknown reasons GitHub actions overwrite HOME to /github/home | |
| # which will break everything unless fixed | |
| # (https://github.com/actions/runner/issues/863) | |
| run: echo "HOME=/home/firedrake" >> "$GITHUB_ENV" | |
| - name: Pre-cleanup | |
| run: | | |
| : # Wipe everything away in the current directory | |
| find . -delete | |
| firedrake-clean | |
| - uses: actions/checkout@v4 | |
| with: | |
| # Download Gusto into a subdirectory not called 'gusto' to make sure | |
| # that the package installs correctly. Otherwise 'import gusto' may | |
| # work even if the installation failed because it is a subdirectory. | |
| path: gusto-repo | |
| - name: Create virtual environment | |
| # pass '--system-site-packages' so Firedrake can be found | |
| run: python3 -m venv --system-site-packages venv-gusto | |
| - name: Install Gusto | |
| id: install-one | |
| run: | | |
| . venv-gusto/bin/activate | |
| pip install ./gusto-repo | |
| pip list | |
| - name: Test serial-only netCDF | |
| run: | | |
| . venv-gusto/bin/activate | |
| : # Run the serial tests | |
| firedrake-run-split-tests 1 1 -n 12 --verbose gusto-repo/integration-tests/model/test_nc_outputting.py --log-file=gusto_netcdf_serial.log | |
| : # Run the parallel tests | |
| firedrake-run-split-tests 2 6 --verbose gusto-repo/integration-tests/model/test_nc_outputting.py --log-file=gusto_netcdf_parallel.log | |
| timeout-minutes: 10 | |
| - name: Install parallel netCDF | |
| # Run even if the step above failed | |
| if: success() || steps.install-one.conclusion == 'success' | |
| id: install-two | |
| run: | | |
| . venv-gusto/bin/activate | |
| pip uninstall -y netCDF4 | |
| : # '--no-build-isolation' has to be passed for mpi4py to be found | |
| : # but this means that we need to install any extra build | |
| : # dependencies manually | |
| pip install Cython | |
| pip install --no-binary netCDF4 --no-build-isolation netCDF4 | |
| - name: Run tests (nprocs = 1) | |
| run: | | |
| . venv-gusto/bin/activate | |
| : # Use pytest-xdist here so we can have a single collated output (not possible | |
| : # for parallel tests) | |
| firedrake-run-split-tests 1 1 -n 12 --dist worksteal "$EXTRA_PYTEST_ARGS" --log-file=gusto1.log | |
| timeout-minutes: 60 | |
| - name: Run tests (nprocs = 2) | |
| # Run even if earlier tests failed | |
| if: success() || steps.install-two.conclusion == 'success' | |
| run: | | |
| . venv-gusto/bin/activate | |
| firedrake-run-split-tests 2 6 "$EXTRA_PYTEST_ARGS" "--log-file=gusto2_{#}.log" | |
| timeout-minutes: 30 | |
| - name: Run tests (nprocs = 3) | |
| if: success() || steps.install-two.conclusion == 'success' | |
| run: | | |
| . venv-gusto/bin/activate | |
| firedrake-run-split-tests 3 4 "$EXTRA_PYTEST_ARGS" "--log-file=gusto3_{#}.log" | |
| timeout-minutes: 10 | |
| - name: Run tests (nprocs = 4) | |
| if: success() || steps.install-two.conclusion == 'success' | |
| run: | | |
| . venv-gusto/bin/activate | |
| firedrake-run-split-tests 4 3 "$EXTRA_PYTEST_ARGS" "--log-file=gusto4_{#}.log" | |
| timeout-minutes: 10 | |
| - name: Upload pytest log files | |
| uses: actions/upload-artifact@v4 | |
| if: success() || steps.install-two.conclusion == 'success' | |
| with: | |
| name: pytest-logs | |
| path: pytest_*.log | |
| retention-days: 5 | |
| - name: Upload Gusto log files | |
| uses: actions/upload-artifact@v4 | |
| if: success() || steps.install-two.conclusion == 'success' | |
| with: | |
| name: gusto-logs | |
| path: gusto*.log | |
| retention-days: 5 | |
| - name: Post-cleanup | |
| if: always() | |
| run: | | |
| find . -delete | |
| firedrake-clean |