Save memory by returning a sparse array from extract_binary_masks_from_structural_channel #197

	name: Linux Conda test

	on:
	pull_request:
	branches:
	- main
	- dev
	push:
	branches:
	- main

	jobs:
	build-linux-conda:
	runs-on: ubuntu-latest
	strategy:
	max-parallel: 5
	matrix:
	python-version: ['3.9', '3.10', '3.11']
	fail-fast: false

	steps:
	- uses: actions/checkout@v4

	- name: Set up Conda
	uses: conda-incubator/setup-miniconda@v3
	with:
	auto-update-conda: true
	python-version: ${{ matrix.python-version }}
	environment-file: environment-minimal.yml
	activate-environment: caiman
	conda-solver: libmamba

	- name: Install OS Dependencies
	shell: bash -l {0}
	run: \|
	sudo apt-get install libglapi-mesa libegl-mesa0 libegl1 libopengl0 libgl1-mesa-glx

	- name: Install Dependencies
	shell: bash -l {0}
	run: \|
	conda install pip
	pip install -e .
	caimanmanager install --inplace

	- name: Test
	shell: bash -l {0}
	run: \|
	caimanmanager test

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