Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

dev to main for release 1.11.2 #1379

Merged
merged 33 commits into from
Jul 25, 2024
Merged

dev to main for release 1.11.2 #1379

merged 33 commits into from
Jul 25, 2024

Commits on May 31, 2024

  1. VERSION to 1.11.2 after release

    @pgunn
    pgunn authored May 31, 2024
    Configuration menu
    Copy the full SHA
    398c64f View commit details
    Browse the repository at this point in the history

Commits on Jun 11, 2024

  1. Add is3D setting to summary_images functions

    @ethanbb
    ethanbb committed Jun 11, 2024
    Configuration menu
    Copy the full SHA
    e401f75 View commit details
    Browse the repository at this point in the history

Commits on Jun 13, 2024

  1. Make movie.removeBL work with 3D movies

    @ethanbb
    ethanbb committed Jun 13, 2024
    Configuration menu
    Copy the full SHA
    af09876 View commit details
    Browse the repository at this point in the history

Commits on Jun 14, 2024

  1. Revert "Add is3D setting to summary_images functions" 

    This reverts commit e401f75.
    @ethanbb
    ethanbb committed Jun 14, 2024
    Configuration menu
    Copy the full SHA
    d139588 View commit details
    Browse the repository at this point in the history

  2. Add tests for to2D and to3D

    @ethanbb
    ethanbb committed Jun 14, 2024
    Configuration menu
    Copy the full SHA
    0857d7a View commit details
    Browse the repository at this point in the history

Commits on Jun 16, 2024

  1. Make cpp exclusion more specific

    @ethanbb
    ethanbb committed Jun 16, 2024
    Configuration menu
    Copy the full SHA
    7e372b3 View commit details
    Browse the repository at this point in the history

Commits on Jun 17, 2024

  1. added bokeh implementation of view_quilt

    @salehtahini
    salehtahini committed Jun 17, 2024
    Configuration menu
    Copy the full SHA
    860e8d8 View commit details
    Browse the repository at this point in the history

Commits on Jun 18, 2024

  1. updated documentation

    @salehtahini
    salehtahini committed Jun 18, 2024
    Configuration menu
    Copy the full SHA
    827c541 View commit details
    Browse the repository at this point in the history

Commits on Jul 1, 2024

  1. Fix naming of Slider()

    @pgunn
    pgunn committed Jul 1, 2024
    Configuration menu
    Copy the full SHA
    54b2fb7 View commit details
    Browse the repository at this point in the history

  2. Merge pull request #1365 from salehtahini/bokeh_view_quilt 

    Added bokeh implementation of view_quilt
    @pgunn
    pgunn authored Jul 1, 2024
    Configuration menu
    Copy the full SHA
    90904b3 View commit details
    Browse the repository at this point in the history

  3. pin peakutils >=1.3.5 (see #1369)

    @pgunn
    pgunn committed Jul 1, 2024
    Configuration menu
    Copy the full SHA
    9c4646e View commit details
    Browse the repository at this point in the history

Commits on Jul 2, 2024

  1. Fix CoM calculation when swap_dim is true

    @ethanbb
    ethanbb committed Jul 2, 2024
    Configuration menu
    Copy the full SHA
    522d456 View commit details
    Browse the repository at this point in the history

  2. Fix plot_contours to use CoMs from updated get_contours

    @ethanbb
    ethanbb committed Jul 2, 2024
    Configuration menu
    Copy the full SHA
    1f88e49 View commit details
    Browse the repository at this point in the history

  3. de-emoji the readme

    @pgunn
    pgunn committed Jul 2, 2024
    Configuration menu
    Copy the full SHA
    8f359bb View commit details
    Browse the repository at this point in the history

  4. Add rewritten com function with C/F order and add test

    @ethanbb
    ethanbb committed Jul 2, 2024
    Configuration menu
    Copy the full SHA
    b38f0fa View commit details
    Browse the repository at this point in the history

  5. caiman_gui: if the user doesn't provide a filename, bail out with a g… 

    …ood message rather than crashing
    @pgunn
    pgunn committed Jul 2, 2024
    Configuration menu
    Copy the full SHA
    f6d30aa View commit details
    Browse the repository at this point in the history

Commits on Jul 5, 2024

  1. Restore individual dimension arguments for com

    @ethanbb
    ethanbb committed Jul 5, 2024
    Configuration menu
    Copy the full SHA
    467c591 View commit details
    Browse the repository at this point in the history

  2. Add slice_dim option for get_contours and 3D test for swap_dim

    @ethanbb
    ethanbb committed Jul 5, 2024
    Configuration menu
    Copy the full SHA
    d883598 View commit details
    Browse the repository at this point in the history

  3. Minor changes to make contours more consistent/predictable

    @ethanbb
    ethanbb committed Jul 5, 2024
    Configuration menu
    Copy the full SHA
    830967c View commit details
    Browse the repository at this point in the history

Commits on Jul 8, 2024

  1. Use None instead of 'auto'

    @ethanbb
    ethanbb committed Jul 8, 2024
    Configuration menu
    Copy the full SHA
    04d1ca2 View commit details
    Browse the repository at this point in the history

Commits on Jul 9, 2024

  1. Merge pull request #1370 from proektlab/contours-com-fix 

    Get correct centers of mass from rois.com even when swap_dim is True in get_contours
    @pgunn
    pgunn authored Jul 9, 2024
    Configuration menu
    Copy the full SHA
    d219783 View commit details
    Browse the repository at this point in the history

Commits on Jul 11, 2024

  1. demo_online_cnmfE: Fix a text cell that was mistakenly marked as code

    @pgunn
    pgunn committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    d0732cb View commit details
    Browse the repository at this point in the history

Commits on Jul 12, 2024

  1. Finish the fix started in #1326 (thanks to @EmeEmu and @marberi for b… 

    …ringing it to my attention)
    @pgunn
    pgunn committed Jul 12, 2024
    Configuration menu
    Copy the full SHA
    2a9d2c8 View commit details
    Browse the repository at this point in the history

Commits on Jul 18, 2024

  1. mmapping: fix a path goof where a double-correction caused a problem,… 

    … thanks t o @nick-youngblut #1373
    @pgunn
    pgunn committed Jul 18, 2024
    Configuration menu
    Copy the full SHA
    2d0108e View commit details
    Browse the repository at this point in the history

  2. Merge pull request #1375 from flatironinstitute/dev-fix_path_goof 

    mmapping: fix a path goof where a double-correction caused a problem
    @pgunn
    pgunn authored Jul 18, 2024
    Configuration menu
    Copy the full SHA
    bf7e8de View commit details
    Browse the repository at this point in the history

Commits on Jul 24, 2024

  1. Merge pull request #1363 from proektlab/summary-images-3d 

    Fix removeBL for 3D movies
    @pgunn
    pgunn authored Jul 24, 2024
    Configuration menu
    Copy the full SHA
    0dac913 View commit details
    Browse the repository at this point in the history

  2. Move (almost) all caiman logging under a named logger called "caiman"

    @pgunn
    pgunn committed Jul 24, 2024
    Configuration menu
    Copy the full SHA
    c82e768 View commit details
    Browse the repository at this point in the history

  3. caiman-logger: Further cleanups, fix problems CI revealed

    @pgunn
    pgunn committed Jul 24, 2024
    Configuration menu
    Copy the full SHA
    9bdbacb View commit details
    Browse the repository at this point in the history

  4. caiman logging change: had to partly back off on import cleanup, fix … 

    …some goofs
    @pgunn
    pgunn committed Jul 24, 2024
    Configuration menu
    Copy the full SHA
    b3fafb5 View commit details
    Browse the repository at this point in the history

  5. Initial go at updating notebooks to use the logger we're calling caiman

    @pgunn
    pgunn committed Jul 24, 2024
    Configuration menu
    Copy the full SHA
    d3a89fc View commit details
    Browse the repository at this point in the history

Commits on Jul 25, 2024

  1. logging change diffset: Fixing a missed line in the mass cut'n'paste … 

    …I did to notebooks
    @pgunn
    pgunn committed Jul 25, 2024
    Configuration menu
    Copy the full SHA
    268e807 View commit details
    Browse the repository at this point in the history

  2. Logging cleanup diffset: Get rid of almost all calls to global logger

    @pgunn
    pgunn committed Jul 25, 2024
    Configuration menu
    Copy the full SHA
    04a04ae View commit details
    Browse the repository at this point in the history

  3. Merge pull request #1378 from flatironinstitute/dev-logging_cleanup 

    Logging cleanup
    @pgunn
    pgunn authored Jul 25, 2024
    Configuration menu
    Copy the full SHA
    e8abf3b View commit details
    Browse the repository at this point in the history