Tests

linting and coverage #64

	name: Tests

	on:
	push:
	branches:
	- main

	jobs:
	tests:
	runs-on: ubuntu-latest
	permissions:
	contents: write

	steps:
	- uses: actions/checkout@v3
	- uses: actions/setup-python@v3
	with:
	python-version: "3.11"

	- name: Install poetry
	run: python -m pip install poetry

	- name: Install pytest
	run: pip install pytest pytest-cov

	- name: Install dependencies
	run: pip install .

	- name: Run Tests
	run: poetry run pytest --cov=elicit tests --cov-report html

	- name: Run Coverage
	run: \|
	poetry run coverage run --source=./elicit -m pytest
	poetry run coverage report
	poetry run coverage xml
	genbadge coverage

	# Share ./docs/reports so that they can be deployed with doc in next job
	- name: Share reports with other jobs
	# if: matrix.nox_session == '...': not needed, if empty wont be shared
	uses: actions/upload-artifact@master
	with:
	name: reports_dir
	path: ./reports

	# 1) retrieve the reports generated previously
	- name: Retrieve reports
	uses: actions/download-artifact@master
	with:
	name: reports_dir
	path: ./reports

	# 6) Publish coverage report
	- name: \[not on TAG\] Create codecov.yaml with correct paths
	if: github.event_name == 'push' && startsWith(github.ref, 'refs/heads')
	shell: bash
	run: \|
	cat << EOF > codecov.yml
	# codecov.yml
	fixes:
	- "/home/runner/work/florence-bockting/prior-elicitation/::" # Correct paths
	EOF
	- name: \[not on TAG\] Publish coverage report
	if: github.event_name == 'push' && startsWith(github.ref, 'refs/heads')
	uses: codecov/codecov-action@v1
	with:
	files: ./reports/coverage/coverage.xml
	token: ${{ secrets.CODECOV_TOKEN }}

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