What's Changed
- chore: exclude
site/
anddocs/
from mypy checks by @msto in #195 - feat: remove python 3.8 support by @nh13 in #197
- Add all_r1 and all_r2 methods on Template by @clintval in #200
- Template to treat 'secondary supplemental' as supplemental by @clintval in #203
- Add a function for determining read pair orientation by @clintval in #201
- Deprecate set_pair_info and _set_mate_info for set_mate_info by @clintval in #202
- Allow insert size calculation to work on 1 read only by @clintval in #205
- Add a method for progress logging multiple alignments by @clintval in #199
- Make sure VcfHeaderNumber.value is called in VariantBuilder. by @tfenne in #215
- Add tabix indexing of gzipped VCFs in VariantBuilder by @tfenne in #214
- fix:
sum_of_base_qualities()
returns zero when a record has no base qualities by @msto in #212 - doc: add fulcrum genomics more prominently by @nh13 in #218
- chore: Move numpy to docs dependency group by @msto in #221
Full Changelog: 0.8.0...1.0.0