Code

Add 3d example#7

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lmanan merged 18 commits intomainfunkelab/cellulus:mainfrom add_3d_examplefunkelab/cellulus:add_3d_exampleCopy head branch name to clipboardMar 3, 2024

+674-285

Commits

Commits on Feb 28, 2024

• Add use_seeds config parameter

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• Ignore samples which are completely background

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• Add if-else cases for handling provided seeds

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• Provide seeds from segment.py

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Commits on Mar 3, 2024

• Update default min size in 3d

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• Return re-ided labels

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• Update post_process code

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• Update segment.py and postprocess.py to detect.py and segment.py

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• Rename segmentation_dataset_config to detection_dataset_config

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• Rename function to segment

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• Add detect.py

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• Rename binary segmentation zarr dataset and centered embeddings zarr dataset

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• Update segment.py and infer.py

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• Rename labels for figures

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• Add example python scripts for 3d example

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• Rename f and ds variable names

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• Refactor example scripts

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• Update mkdocs.yml

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