Minor bugfix

gFedonin · Aug 9, 2017 · e8336c7 · e8336c7
1 parent 59ca473
commit e8336c7
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diff --git a/bin/VirGenA.jar b/bin/VirGenA.jar
diff --git a/src/Postprocessor.java b/src/Postprocessor.java
@@ -507,7 +507,7 @@ ArrayList<RepeatInterval>[] findRegionsToCut(String[] assemblies, int[][] contig
     makeBlastDB(assemblies, selectedRefs);
     ArrayList<RepeatInterval>[] intervals = getRawIntervals(assemblies, contigEnds, selectedRefs, readNums);
     ArrayList<RepeatInterval>[] res = filterIntervals(intervals, readNums);
-    updateIntervals(res);
+    res = updateIntervals(res);
     deleteBlastDB(selectedRefs);
     if(debug){
       BufferedWriter writer = new BufferedWriter(new FileWriter(outPath + "intervals.txt"));