This is the repository for the SARS-CoV-2 in wastewater project. Derived from the worldwide recent epidemic of SARS-CoV-2, there have been initiatives all around the globe to measure the presence of the virus in the population. One way to do this is by measuring specific markers of the virus in the wastewater of different localities. One such service has been provided by the Scottish Environmental Protection Agency (SEPA) in the territory of Scotland in the UK. Here we aim to visualize, for further understanding, the prevalence of the disease in different types of populations and across time.
This project was made by:
- Gabriel Ramirez Vilchis [[email protected]]
- Santiago Orozco Barrera [[email protected]]
The employed data and asociated data of the UK-Scotland-SEPA in the Wast Water page. It involves 3 files, of which we only used 2: monitoring-sites.csv and sepa_samples_202312.csv UK - Scotland - SEPA: Wastewater SPHERE (15/10/2024). https://sphere.waterpathogens.org/dataset/634a33cd-9444-4f4a-8234-b7886e45d020.
This README provides basic usage information. For more detailed information on the scripts design and implementation, see the project_report.md file in the docs directory. The directory structure of the project is as follows: src (contains the source code), lib (contains the libraries to use), docs (documentation), tests (for testing), data (contains the datasets we use)
The source code is available in this repository. Any contributions or suggestions via pull requests are welcomed.
This script is available under the MIT license. See the LICENSE file for more details.
If you use this script in your work, please cite it as: Ramirez, G. and Orozco, S. (2024). SARS-CoV-2 in wastewater (v1.0.0) [GitHub Repository]. GitHub. https://github.com/gabrielramirezv/SARS-CoV-2_in_wastewater/
If you have problems or questions, please open an issue in this repository or contact us at: [[email protected]] or [[email protected]].