Updating workflows/sars-cov-2-variant-calling/sars-cov-2-pe-illumina-…

…artic-variant-calling from 0.5.4 to 0.5.5
galaxyproject · Jun 24, 2024 · 30b6770 · 30b6770
1 parent ba9eb61
commit 30b6770
Showing 1 changed file with 9 additions and 9 deletions.
diff --git a/...-cov-2-variant-calling/sars-cov-2-pe-illumina-artic-variant-calling/pe-artic-variation.ga b/...-cov-2-variant-calling/sars-cov-2-pe-illumina-artic-variant-calling/pe-artic-variation.ga
@@ -11,7 +11,7 @@
     "format-version": "0.1",
     "license": "MIT",
     "name": "COVID-19: variation analysis on ARTIC PE data",
-    "release": "0.5.4",
+    "release": "0.5.5",
     "steps": {
         "0": {
             "annotation": "Illumina reads from ARTIC assay with fastqsanger encoding",
@@ -662,7 +662,7 @@
         },
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             "errors": null,
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@@ -710,15 +710,15 @@
                     "output_name": "output_bam"
                 }
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+            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/ivar_trim/ivar_trim/1.4.3+galaxy0",
             "tool_shed_repository": {
-                "changeset_revision": "86a20ae274fc",
+                "changeset_revision": "a250929be21b",
                 "name": "ivar_trim",
                 "owner": "iuc",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
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-            "tool_version": "1.4.2+galaxy0",
+            "tool_version": "1.4.3+galaxy0",
             "type": "tool",
             "uuid": "7730e635-853f-4f9f-9451-bffbe6aedd15",
             "when": null,
@@ -987,7 +987,7 @@
         },
         "22": {
             "annotation": "",
-            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/ivar_removereads/ivar_removereads/1.4.2+galaxy0",
+            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/ivar_removereads/ivar_removereads/1.4.3+galaxy0",
             "errors": null,
             "id": 22,
             "input_connections": {
@@ -1027,15 +1027,15 @@
                 "top": 48.96875
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             "post_job_actions": {},
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/ivar_removereads/ivar_removereads/1.4.2+galaxy0",
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/ivar_removereads/ivar_removereads/1.4.3+galaxy0",
             "tool_shed_repository": {
-                "changeset_revision": "a1c2aecd7a0d",
+                "changeset_revision": "5dc33613c288",
                 "name": "ivar_removereads",
                 "owner": "iuc",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
             "tool_state": "{\"amplicons\": {\"computed\": \"no\", \"__current_case__\": 1, \"amplicon_info\": {\"__class__\": \"ConnectedValue\"}}, \"input_bam\": {\"__class__\": \"ConnectedValue\"}, \"input_bed\": {\"__class__\": \"ConnectedValue\"}, \"variants_tsv\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
-            "tool_version": "1.4.2+galaxy0",
+            "tool_version": "1.4.3+galaxy0",
             "type": "tool",
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             "when": null,