Minor fixes to tool_data_table_conf and related files for clair3 and artic

tools/artic/artic_minion.xml

@@ -1,4 +1,4 @@
-<tool id="artic_minion" name="ARTIC minion" version="@TOOL_VERSION@+galaxy0" profile="20.09">
+<tool id="artic_minion" name="ARTIC minion" version="@TOOL_VERSION@+galaxy1" profile="23.2">
     <description>Build consensus sequence and call variants from amplicon-based nanopore sequence data</description>
     <macros>
         <import>macros.xml</import>

tools/artic/test-data/clair3_models.loc

@@ -7,4 +7,4 @@
 #
 #So, clair3_models.loc could look something like this:
 test_model	ont		$(dirname $(which run_clair3.sh))/models/r941_prom_hac_g360+g422	clair3
-r1041_e82_400bps_sup_v500	r1041_e82_400bps_sup_v500	ont	01c05768661bdd7de611e6bae1043c43b7523a54b223e029c683bfac0db7a678	/no/such/model	rerio
+r1041_e82_400bps_sup_v500	ont	01c05768661bdd7de611e6bae1043c43b7523a54b223e029c683bfac0db7a678	/no/such/model	rerio

tools/artic/tool-data/models.loc.sample

@@ -1,13 +1,4 @@
-#Enter the model names in the second column, the platform name in the second and the path in the third.
-#This file lists the locations and dbkeys of all the model files
-#under the "models" directory (a directory that contains a directory
-#for each build). This file has the format (white space characters are
-#TAB characters):
-#
-#<id>    <name>    <platform>    <path>
-#
-#So, all_model.loc could look something like this:
-test_model	"the_model_name"	r941_prom_hac_g360+g422	$(dirname $(which run_clair3.sh))/models/r941_prom_hac_g360+g422#This file lists the names and locations of all the clair3 model files
+#This file lists the names and locations of all the clair3 model files
 #under the "clair3_models" directory (a directory that contains a directory
 #for each build). This file has the format (white space characters are
 #TAB characters):

tools/clair3/clair3.xml

@@ -2,7 +2,7 @@
     <description>germline small variant caller for long-reads</description>
     <macros>
         <token name="@TOOL_VERSION@">1.0.10</token>
-        <token name="@VERSION_SUFFIX@">1</token>
+        <token name="@VERSION_SUFFIX@">2</token>
     </macros>
     <xrefs>
         <xref type='bio.tools'>clair3</xref>

tools/clair3/test-data/clair3_models.loc

@@ -1,11 +1,10 @@
-#Enter the model names in the second column, the platform name in the second and the path in the third.
-#This file lists the locations and dbkeys of all the model files
-#under the "models" directory (a directory that contains a directory
+#This file lists the names and locations of all the clair3 model files
+#under the "clair3_models" directory (a directory that contains a directory
 #for each build). This file has the format (white space characters are
 #TAB characters):
 #
-#<unique_build_id>  <display_name>   <platform> <file_path>	<source>
+#<unique_name>	<platform>	<sha256sum>	<file_path>	<source>
 #
-#So, all_model.loc could look something like this:
-test_model	"the_model_name"	ont	$(dirname $(which run_clair3.sh))/models/r941_prom_hac_g360+g422	clair3
-r1041_e82_400bps_sup_v500	r1041_e82_400bps_sup_v500	ont	/no/such/model	rerio
+#So, clair3_models.loc could look something like this:
+test_model	ont		$(dirname $(which run_clair3.sh))/models/r941_prom_hac_g360+g422	clair3
+r1041_e82_400bps_sup_v500	ont	01c05768661bdd7de611e6bae1043c43b7523a54b223e029c683bfac0db7a678	/no/such/model	rerio

tools/clair3/tool-data/clair3_models.loc.sample

@@ -0,0 +1,9 @@
+#This file lists the names and locations of all the clair3 model files
+#under the "clair3_models" directory (a directory that contains a directory
+#for each build). This file has the format (white space characters are
+#TAB characters):
+#
+#<unique_name>	<platform>	<sha256sum>	<file_path>	<source>
+#
+#So, clair3_models.loc could look something like this:
+test_model	ont		$(dirname $(which run_clair3.sh))/models/r941_prom_hac_g360+g422	clair3

tools/clair3/tool_data_table_conf.xml.sample

@@ -2,8 +2,8 @@
 <tables>
     <!-- Locations of clair3 model folders -->
     <table name="model" comment_char="#">
-        <columns>value, name, platform, path, source</columns>
-        <file path="tool-data/model.loc" />
+        <columns>value, platform, sha256, path, source</columns>
+        <file path="tool-data/clair3_models.loc" />
     </table>
     <table name="all_fasta" comment_char="#">
         <columns>value, dbkey, name, path</columns>

tools/clair3/tool_data_table_conf.xml.test

@@ -1,8 +1,8 @@
 <?xml version="1.0"?>
 <tables>
-    <!-- Locations of model folders -->
+    <!-- Locations of clair3 model folders -->
     <table name="clair3_models" comment_char="#">
-        <columns>value, name, platform, path, source</columns>
+        <columns>value, platform, sha256, path, source</columns>
         <file path="${__HERE__}/test-data/clair3_models.loc" />
     </table>
     <!-- Locations of reference genome files in fasta format -->