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| output: | ||
| title: Publications 2023 | ||
| title: Publications | ||
| description: > | ||
| features: | ||
| - title: "Implementation Experience Report for the Developing Latimer Core Standard: The DiSSCo Flanders use-case" | ||
| description: | | ||
| Breugelmans L. & Trekels M. 2023. Implementation Experience Report for the Developing Latimer Core Standard: The DiSSCo Flanders use-case. Biodiversity Information Science and Standards 7: e113766. | ||
| Breugelmans L. & Trekels M. 2023. Implementation Experience Report for the Developing Latimer Core Standard: The DiSSCo Flanders use-case. Biodiversity Information Science and Standards 7: e113766. https://doi.org/10.3897/biss.7.113766 | ||
| href: https://doi.org/10.3897/biss.7.113766 | ||
| - title: "Species detection and segmentation of multi-specimen historical herbaria" | ||
| description: | | ||
| Chandrasekar K.K.T., Milleville K. & Verstockt S. 2021. Species detection and segmentation of multi-specimen historical herbaria. Biodiversity Information Science and Standards 5: e74060. https://doi.org/10.3897/biss.5.74060 | ||
| href: https://doi.org/10.3897/biss.5.74060 | ||
| - title: "Meta data enrichment for improving the quality and usability of botanical collections" | ||
| description: | | ||
| Chandrasekar T. & Kumar K. 2022. Meta data enrichment for improving the quality and usability of botanical collections. PhD Thesis, Ghent University. http://hdl.handle.net/1854/LU-8760438 | ||
| href: http://hdl.handle.net/1854/LU-8760438 | ||
| - title: "Field Collection" | ||
| description: | | ||
| Corrales, C., Forrest, L., Harris, D., Dickie, J., Fulcher, T., Paton, A., Haston, E., Haring, E., Vandelook, F., Thines, M., Kahila, G., Vondráček, D., von Rintelen, T., Emery, A., Krukenhauser, L., Martín, M. P., Sanmartín, I., Ruiz, Y., Diéguez-Uribeondo, J., ... Astrin, J. J. (2023). Field Collection. In C. Carolina, & J. J. Astrin (Eds.), Biodiversity Biobanking – a Handbook on Protocols and Practices (pp. 22-77). (Advanced Books). Pensoft Publishers. https://doi.org/10.3897/ab.e101876 | ||
| href: https://doi.org/10.3897/ab.e101876 | ||
| - title: "Biobank Management" | ||
| description: | | ||
| Corrales, C., Leliaert, F., & Astrin, J. J. (2023). Biobank Management. In C. Carolina, & J. J. Astrin (Eds.), Biodiversity Biobanking – a Handbook on Protocols and Practices (pp. 13-17). (Advanced Books). Pensoft Publishers. | ||
| Corrales, C., Leliaert, F., & Astrin, J. J. (2023). Biobank Management. In C. Carolina, & J. J. Astrin (Eds.), Biodiversity Biobanking – a Handbook on Protocols and Practices (pp. 13-17). (Advanced Books). Pensoft Publishers. https://doi.org/10.3897/ab.e101876 | ||
| href: https://doi.org/10.3897/ab.e101876 | ||
| - title: "DNA" | ||
| description: | | ||
| Corrales, C., Leliaert, F., Forrest, L., Fulcher, T., Poczai, P., Haring, E., Krukenhauser, L., Thines, M., Mulcahy, D., Mackenzie-Dodds, J., Martín, M. P., Sanmartín, I., Ruiz, Y., Diéguez-Uribeondo, J., Vondráček, D., Poczai, P., & Astrin, J. J. (2023). DNA. In C. Carolina, & J. J. Astrin (Eds.), Biodiversity Biobanking – a Handbook on Protocols and Practices (pp. 126-136). (Advanced Books). Pensoft Publishers. https://doi.org/10.3897/ab.e101876 | ||
| href: https://doi.org/10.3897/ab.e101876 | ||
| - title: "Cryopreservation" | ||
| description: | | ||
| Corrales, C., Leliaert, F., Forrest, L., Martín, M. P., Vandelook, F., Thines, M., Poczai, P., Kahila, G., Mulcahy, D., Haring, E., Krukenhauser, L., Mackenzie-Dodds, J., Nagel, M., Ballesteros, D., & Astrin, J. J. (2023). Cryopreservation. In C. Carolina, & J. J. Astrin (Eds.), Biodiversity Biobanking – a Handbook on Protocols and Practices (pp. 97-113). (Advanced Books). Pensoft Publishers. https://doi.org/10.3897/ab.e101876 | ||
| href: https://doi.org/10.3897/ab.e101876 | ||
| - title: "Genomic Characterisation" | ||
| description: | | ||
| M., & Astrin, J. J. (2023). Genomic Characterisation. In C. Carolina, & J. J. Astrin (Eds.), Biodiversity Biobanking – a Handbook on Protocols and Practices (pp. 145-150). (Advanced Books). Pensoft Publishers. https://doi.org/10.3897/ab.e101876 | ||
| href: https://doi.org/10.3897/ab.e101876 | ||
| - title: "Retrieval from Preservation and Viability Assessments" | ||
| description: | | ||
| Corrales, C., Poczai, P., Paton, A., Forrest, L., Dickie, J., Harris, D., Vandelook, F., Martín, M. P., Mulcahy, D., Mackenzie-Dodds, J., & Astrin, J. J. (2023). Retrieval from Preservation and Viability Assessments. In C. Carolina, & J. J. Astrin (Eds.), Biodiversity Biobanking – a Handbook on Protocols and Practices (pp. 116-125). https://doi.org/10.3897/ab.e101876 | ||
| href: https://doi.org/10.3897/ab.e101876 | ||
| - title: "Culture Preservation and Storage Methods" | ||
| description: | | ||
| Corrales, C., Thines, M., Forrest, L., Vandelook, F., Mackenzie-Dodds, J., Haston, E., Martín, M. P., Nagel, M., Ballesteros, D., & Astrin, J. J. (2023). Culture Preservation and Storage Methods. In C. Carolina, & J. J. Astrin (Eds.), Biodiversity Biobanking – a Handbook on Protocols and Practices (pp. 76-96). https://doi.org/10.3897/ab.e101876 | ||
| href: https://doi.org/10.3897/ab.e101876 | ||
| - title: "Meise Botanic Garden Herbarium Sheet Workflow" | ||
| description: | | ||
| De Smedt S. & Bogaerts A. 2022. Meise Botanic Garden Herbarium Sheet Workflow. version 1.0. Available at: https://dissco.github.io/HerbariumSheets/MeiseBGHerbariumSheets.html | ||
| href: https://dissco.github.io/HerbariumSheets/MeiseBGHerbariumSheets.html | ||
| - title: "DiSSCo Digitisation Guide: Pre-Digitisation Checklist" | ||
| description: | | ||
| De Smedt S. & Bogaerts A. 2022. DiSSCo Digitisation Guide: Pre-Digitisation Checklist. v.1.1. Available at: https://dissco.github.io/Digitisation/PreDigCuration/PreDigCuration.html | ||
| href: https://dissco.github.io/Digitisation/PreDigCuration/PreDigCuration.html | ||
| - title: "Ten lessons learned from the mass digitisation of a herbarium collection" | ||
| description: | | ||
| De Smedt S., Bogaerts A., De Meeter N., Dillen M., Engledow H., Van Wambeke P., Leliaert F., Groom Q. 2024. Ten lessons learned from the mass digitisation of a herbarium collection. Submitted. | ||
| href: | ||
| - title: "Calculating the Digitization Level of Specimens with the Minimum Information about a Digital Specimen (MIDS) Standard" | ||
| description: | | ||
| Dillen M., Huybrechts P., Groom Q. & Delgat L. 2022. Calculating the Digitization Level of Specimens with the Minimum Information about a Digital Specimen (MIDS) Standard. Biodiversity Information Science and Standards 6: e90879. https://doi.org/10.3897/biss.6.90879 | ||
| href: https://doi.org/10.3897/biss.6.90879 | ||
| - title: "The Meise Botanic Garden Herbarium Data Management Plan" | ||
| description: | | ||
| Dillen M., Abraham L., Bogaerts A., De Smedt S., Engledow H., Leliaert F., Trekels M., Dessein S., Groom Q. The Meise Botanic Garden Herbarium Data Management Plan. Submitted. | ||
| href: | ||
| - title: "Planning the migration to a new database: implications for the collections of Meise Botanic Garden" | ||
| description: | | ||
| Engledow H., Bogaerts A., De Smedt S. & Tack W. 2023. Planning the migration to a new database: implications for the collections of Meise Botanic Garden. Biodiversity Information Science and Standards 7: e111422. https://doi.org/10.3897/biss.7.111422 | ||
| href: https://doi.org/10.3897/biss.7.111422 | ||
| - title: "The disambiguation of people names in biological collections" | ||
| description: | | ||
| Groom Q., Bräuchler C., Cubey R.W., Dillen M., Huybrechts P., Kearney N., Klazenga N., Leachman S., Paul D.L., Rogers H., & others 2022. The disambiguation of people names in biological collections. Biodiversity Data Journal 10: e86089. https://doi.org/10.3897%2FBDJ.10.e86089 | ||
| href: https://doi.org/10.3897%2FBDJ.10.e86089 | ||
| - title: "Envisaging a global infrastructure to exploit the potential of digitised collections" | ||
| description: | | ||
| Groom Q., Dillen M., Addink W., Ariño A.H., Bölling C., Bonnet P., Cecchi L., Ellwood E.R., Figueira R., Gagnier P.-Y., & others 2023. Envisaging a global infrastructure to exploit the potential of digitised collections. Biodiversity Data Journal 11: e109439. https://doi.org/10.3897/BDJ.11.e109439 | ||
| href: https://doi.org/10.3897/BDJ.11.e109439 | ||
| - title: "Hybridization of Oxalis corniculata and O. dillenii in their non-native range" | ||
| description: | | ||
| Groom Q., Meeus S., Janssens S.B., Leus L. & Hoste I. 2021. Hybridization of Oxalis corniculata and O. dillenii in their non-native range. PhytoKeys 178: 17-30. https://doi.org/10.3897/phytokeys.178.61031 | ||
| href: https://doi.org/10.3897/phytokeys.178.61031 | ||
| - title: "Mapping across Standards to Calculate the MIDS Level of Digitisation of Natural Science Collections" | ||
| description: | | ||
| Haston E., Dillen M., Leeflang S., Addink W., Weiland C., Triebel D., Rindal E., Penzlin A., Walcott R., Humphries J., et al. 2023. Mapping across Standards to Calculate the MIDS Level of Digitisation of Natural Science Collections. Biodiversity Information Science and Standards 7: e112672. https://doi.org/10.3897/biss.7.112672 | ||
| href: https://doi.org/10.3897/biss.7.112672 | ||
| - title: "Estimating the Completeness of Preserved Collections in Representing Global Biodiversity" | ||
| description: | | ||
| Huybrechts P., Trekels M. & Groom Q. 2021. Estimating the Completeness of Preserved Collections in Representing Global Biodiversity. Biodiversity Information Science and Standards 5: e74032. https://doi.org/10.3897/biss.5.74032 | ||
| href: https://doi.org/10.3897/biss.5.74032 | ||
| - title: "How Much of Biodiversity is Represented in Collections: A big data workflow of aggregated occurrence data" | ||
| description: | | ||
| Huybrechts P., Trekels M. & Groom Q. 2022. How Much of Biodiversity is Represented in Collections: A big data workflow of aggregated occurrence data. Biodiversity Information Science and Standards 6: e94279. https://doi.org/10.3897/biss.6.94279 | ||
| href: https://doi.org/10.3897/biss.6.94279 | ||
| - title: "Enabling botanical collaboration through digitization of the Meise Botanic Garden and Central African herbaria" | ||
| description: | | ||
| Leliaert F., Bogaerts A., de Meeter N., Dessein S., Dillen M., Engledow H., Groom Q., Lanata F., Mergen P., Ntore S., et al. 2023. Enabling botanical collaboration through digitization of the Meise Botanic Garden and Central African herbaria. Proceedings of the Royal Academy for Overseas Sciences (accepted) preprint: https://hal.science/hal-04373221 | ||
| href: https://hal.science/hal-04373221 | ||
| - title: "Origins and key contributors to the economic botany collection of Meise Botanic Garden" | ||
| description: | | ||
| Leyman V. & Leliaert F. Origins and key contributors to the economic botany collection of Meise Botanic Garden. Proceedings of the Royal Academy for Overseas Sciences (submitted). | ||
| href: | ||
| - title: "Recommendations for interoperability among infrastructures" | ||
| description: | | ||
| Meeus S., Addink W., Agosti D., Arvanitidis C., Balech B., Dillen M., Dimitrova M., González-Aranda J.M., Holetschek J., Islam S., et al. 2022. Recommendations for interoperability among infrastructures. Research Ideas and Outcomes 8: e96180. https://doi.org/10.3897/rio.8.e96180 | ||
| href: https://doi.org/10.3897/rio.8.e96180 | ||
| - title: "Network analysis of specimen co-collection" | ||
| description: | | ||
| Meeus S., August T., Trekels M., Reyserhove L. & Groom Q. 2021. Network analysis of specimen co-collection. BioHackrXiv. https://doi.org/10.37044/osf.io/4ahng | ||
| href: https://doi.org/10.37044/osf.io/4ahng | ||
| - title: "FAIR but not Necessarily Open: Sensitive data in the domain of biodiversity" | ||
| description: | | ||
| Mergen P., Meeus S., Leliaert F. 2023. FAIR but not Necessarily Open: Sensitive data in the domain of biodiversity. Biodiversity Information Science and Standards 7: e112296. https://doi.org/10.3897/biss.7.112296 | ||
| href: https://doi.org/10.3897/biss.7.112296 | ||
| - title: "Towards Sustainable Funding Models for the European Open Science Cloud: Financial Sustainability Task Force Progress report" | ||
| description: | | ||
| Roi, A., Robertson , D., Hacque-Cosson, F., Versic Ilijasic, I., Meijer, J., Klemeier, J., Kaczmirek, L., Mazon , M. R., De Giacomo, O., Mergen, P., Belsø, R., & Muscella, S. 2022. Towards Sustainable Funding Models for the European Open Science Cloud: Financial Sustainability Task Force Progress report. EOSC Association, AISBL. https://www.eosc.eu/sites/default/files/2022-11/financial-sustainability-tf-progress-report-nov-2022.pdf | ||
| href: https://www.eosc.eu/sites/default/files/2022-11/financial-sustainability-tf-progress-report-nov-2022.pdf | ||
| - title: "Evaluating Segmentation Approaches on Digitized Herbarium Specimens" | ||
| description: | | ||
| Milleville K., Chandrasekar K.K.T., Van de Weghe N. & Verstockt S. 2023. Evaluating Segmentation Approaches on Digitized Herbarium Specimens. In: International Symposium on Visual Computing: 65–78. https://doi.org/10.1007/978-3-031-47966-3_6 | ||
| href: https://doi.org/10.1007/978-3-031-47966-3_6 | ||
| - title: "Automatic extraction of specimens from multi-specimen herbaria" | ||
| description: | | ||
| Milleville K., Thirukokaranam Chandrasekar K.K. & Verstockt S. 2023. Automatic extraction of specimens from multi-specimen herbaria. ACM Journal on Computing and Cultural Heritage 16 (1): 1–15. https://doi.org/10.1145/3575862 | ||
| href: https://doi.org/10.1145/3575862 | ||
| - title: "Unlocking the potential of digital archives via artificial intelligence" | ||
| description: | | ||
| Milleville, K. 2023. Unlocking the potential of digital archives via artificial intelligence. PhD Thesis, Ghent University. http://hdl.handle.net/1854/LU-01HJ8D40DJRSDQ2VNY1AP1R7Z9 | ||
| href: http://hdl.handle.net/1854/LU-01HJ8D40DJRSDQ2VNY1AP1R7Z9 | ||
| - title: "Global access to nomenclatural botanical resources: Evaluating open access availability" | ||
| description: | | ||
| Nicolson N., Trekels M., Groom Q.J., Knapp S. & Paton A.J. 2023. Global access to nomenclatural botanical resources: Evaluating open access availability. Plants, People, Planet 5 (6): 899–907. https://doi.org/10.1002/ppp3.10438 | ||
| href: https://doi.org/10.1002/ppp3.10438 | ||
| - title: "Making the most out of your collection data to assess the extinction risk of endemic plant species" | ||
| description: | | ||
| Tack W., Engledow H., Sosef M. 2022. Making the most out of your collection data to assess the extinction risk of endemic plant species. SPNHC conference, Edinburgh, Scotland, UK. https://doi.org/10.5281/zenodo.6593592 | ||
| href: https://doi.org/10.5281/zenodo.6593592 | ||
| - title: "Page boundary extraction of bound historical herbaria" | ||
| description: | | ||
| Thirukokaranam Chandrasekar K.K. & Verstockt S. 2020. Page boundary extraction of bound historical herbaria. In: 12th International Conference on Agents and Artificial Intelligence (ICAART): 476–483. https://doi.org/10.5220/0009154104760483 | ||
| href: https://doi.org/10.5220/0009154104760483 | ||
| - title: "DiSSCo Flanders: A regional natural science collections management infrastructure in an international context" | ||
| description: | | ||
| Trekels M., Beirinckx L., Claerhout T., Dugardin C., Leliaert F., Pereboom Z., Slos D., Van Baelen A., Vandepitte L., Veltjen E., et al. 2022. DiSSCo Flanders: A regional natural science collections management infrastructure in an international context. Biodiversity Information Science and Standards 6: e94350. https://doi.org/10.3897/biss.6.94350 | ||
| href: https://doi.org/10.3897/biss.6.94350 | ||
| - title: "DiSSCo Flanders - towards a collection management infrastructure for Flanders" | ||
| description: | | ||
| Trekels M. 2022. DiSSCo Flanders - towards a collection management infrastructure for Flanders. Empowering Biodiversity Research II, AfricaMuseum, Belgium. https://doi.org/10.5281/zenodo.6606798 | ||
| href: https://doi.org/10.5281/zenodo.6606798 | ||
| - title: "GBIF hosted portals for DiSSCo nodes, and university collections use cases" | ||
| description: | | ||
| Trekels M. 2024. GBIF hosted portals for DiSSCo nodes, and university collections use cases. Empowering Biodiversity Research III conference, Naturalis, Netherlands, March 25-26th 2024. | ||
| href: | ||
| - title: "DiSSCo-Flanders WP2-task 2.1, Detailed inventory of the collections: Report" | ||
| description: | | ||
| Van Baelen A., Poot N., Beirinckx L., Bogaerts A., Bellefroid E., Claerhout T., De Smedt S., Dugardin C., Engledow H., Leliaert F., et al. 2022. DiSSCo-Flanders WP2-task 2.1, Detailed inventory of the collections: Report. https://doi.org/10.5281/zenodo.6511351 | ||
| href: https://doi.org/10.5281/zenodo.6511351 | ||
| - title: "Unlocking KU Leuven’s natural science collections" | ||
| description: | | ||
| Van Baelen A., Poot N. & Goossens E. Unlocking KU Leuven’s natural science collections. Proceedings of KU Leuven Open Science Day 2024 (accepted). | ||
| href: | ||
| - title: "Mobilizing KU Leuven’s natural science collections as part of DiSSCo Flanders" | ||
| description: | | ||
| Van Baelen A., Poot N. & Goossens E. Mobilizing KU Leuven’s natural science collections as part of DiSSCo Flanders. Abstract submitted to the 2024 Joint Annual Meeting of ICOM-UMAC and UNIVERSEUM “Shaping Transformation. University Collections in a Changing World” in Dresden (Germany), 24/09/2024 – 29/09/2024 (accepted). | ||
| href: | ||
| - title: "A Data Standard for Dynamic Collection Descriptions" | ||
| description: | | ||
| Woodburn M, Droege G, Grant S, Groom Q, Jones J, Trekels M, Vincent S, Webbink K (2021) A Data Standard for Dynamic Collection Descriptions. Biodiversity Information Science and Standards 5: e73902. https://doi.org/10.3897/biss.5.73902 | ||
| href: https://doi.org/10.3897/biss.5.73902 |