Merge pull request #23583 from geneontology/issue-23568

merge after CHEBI import has ran fixes #23568

src/ontology/go-edit.obo

@@ -51196,7 +51196,7 @@ xref: Wikipedia:Norepinephrine_transporter
 intersection_of: GO:0015293 ! symporter activity
 intersection_of: has_primary_input CHEBI:17996 ! chloride
 intersection_of: has_primary_input CHEBI:29101 ! sodium(1+)
-intersection_of: has_primary_input CHEBI:33569 ! noradrenaline
+intersection_of: has_primary_input CHEBI:72587 ! (R)-noradrenaline
 relationship: part_of GO:0051620 ! norepinephrine uptake
 
 [Term]
@@ -96144,7 +96144,7 @@ synonym: "phytochromobilin biosynthesis" EXACT []
 synonym: "phytochromobilin formation" EXACT []
 synonym: "phytochromobilin synthesis" EXACT []
 intersection_of: GO:0009058 ! biosynthetic process
-intersection_of: has_primary_output CHEBI:26116 ! phytochromobilin
+intersection_of: has_primary_output CHEBI:57439 ! (3Z)-phytochromobilin
 
 [Term]
 id: GO:0010025
@@ -115453,7 +115453,7 @@ synonym: "levarterenol transport" EXACT []
 synonym: "noradrenaline transport" EXACT []
 is_a: GO:0051937 ! catecholamine transport
 intersection_of: GO:0006810 ! transport
-intersection_of: has_primary_input CHEBI:33569 ! noradrenaline
+intersection_of: has_primary_input CHEBI:72587 ! (R)-noradrenaline
 
 [Term]
 id: GO:0015875
@@ -189618,7 +189618,7 @@ def: "The chemical reactions and pathways involving O-glucosylated derivatives o
 synonym: "kaempferol O-glucoside metabolism" EXACT []
 is_a: GO:0016137 ! glycoside metabolic process
 intersection_of: GO:0008152 ! metabolic process
-intersection_of: has_primary_input_or_output CHEBI:30200 ! kaempferol 3-O-beta-D-glucoside
+intersection_of: has_primary_input_or_output CHEBI:169942 ! kaempferol 3-0-beta-D-glucoside(1-)
 
 [Term]
 id: GO:0033330
@@ -189633,7 +189633,7 @@ xref: MetaCyc:PWY-5320
 is_a: GO:0016138 ! glycoside biosynthetic process
 is_a: GO:0033329 ! kaempferol O-glucoside metabolic process
 intersection_of: GO:0009058 ! biosynthetic process
-intersection_of: has_primary_output CHEBI:30200 ! kaempferol 3-O-beta-D-glucoside
+intersection_of: has_primary_output CHEBI:169942 ! kaempferol 3-O-beta-D-glucoside(1-)
 
 [Term]
 id: GO:0033331
@@ -233830,7 +233830,7 @@ synonym: "noradrenaline metabolic process" EXACT []
 synonym: "noradrenaline metabolism" EXACT []
 synonym: "norepinephrine metabolism" EXACT []
 intersection_of: GO:0008152 ! metabolic process
-intersection_of: has_primary_input_or_output CHEBI:33569 ! noradrenaline
+intersection_of: has_primary_input_or_output CHEBI:72587 ! (R)-noradrenaline
 
 [Term]
 id: GO:0042416
@@ -233905,7 +233905,7 @@ synonym: "norepinephrine biosynthesis" EXACT []
 synonym: "norepinephrine formation" EXACT []
 synonym: "norepinephrine synthesis" EXACT []
 intersection_of: GO:0009058 ! biosynthetic process
-intersection_of: has_primary_output CHEBI:33569 ! noradrenaline
+intersection_of: has_primary_output CHEBI:72587 ! (R)-noradrenaline
 
 [Term]
 id: GO:0042422
@@ -233921,7 +233921,7 @@ synonym: "norepinephrine catabolism" EXACT []
 synonym: "norepinephrine degradation" EXACT []
 xref: Wikipedia:Norepinephrine#Degradation
 intersection_of: GO:0009056 ! catabolic process
-intersection_of: has_primary_input CHEBI:33569 ! noradrenaline
+intersection_of: has_primary_input CHEBI:72587 ! (R)-noradrenaline
 
 [Term]
 id: GO:0042423
@@ -248949,7 +248949,7 @@ namespace: molecular_function
 def: "Binding to suramin, a naphthalenesulfonic acid compound which is used in the treatment of diseases caused by trypanosomes and worms." [GOC:jl, Wikipedia:Suramin]
 synonym: "Germanin binding" EXACT []
 intersection_of: GO:0005488 ! binding
-intersection_of: has_input CHEBI:45906 ! suramin
+intersection_of: has_input CHEBI:180911 ! suramin(6-)
 
 [Term]
 id: GO:0043927
@@ -296299,7 +296299,7 @@ def: "The regulated release of norepinephrine by a cell. Norepinephrine is a cat
 synonym: "noradrenaline secretion" EXACT []
 is_a: GO:0023061 ! signal release
 intersection_of: GO:0046903 ! secretion
-intersection_of: has_primary_input CHEBI:33569 ! noradrenaline
+intersection_of: has_primary_input CHEBI:72587 ! (R)-noradrenaline
 
 [Term]
 id: GO:0048244
@@ -320078,7 +320078,7 @@ namespace: molecular_function
 def: "Binding to norepinephrine, (3,4-dihydroxyphenyl-2-aminoethanol), a hormone secreted by the adrenal medulla and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts of the CNS. It is also the biosynthetic precursor of epinephrine." [GOC:ai]
 synonym: "noradrenaline binding" EXACT []
 intersection_of: GO:0005488 ! binding
-intersection_of: has_input CHEBI:33569 ! noradrenaline
+intersection_of: has_input CHEBI:72587 ! (R)-noradrenaline
 
 [Term]
 id: GO:0051381
@@ -322765,7 +322765,7 @@ synonym: "noradrenaline uptake" EXACT []
 synonym: "norepinephrine import" EXACT [GOC:dph, GOC:tb]
 synonym: "norepinephrine reuptake" EXACT []
 intersection_of: GO:0006810 ! transport
-intersection_of: has_primary_input CHEBI:33569 ! noradrenaline
+intersection_of: has_primary_input CHEBI:72587 ! (R)-noradrenaline
 intersection_of: has_target_end_location GO:0005622 ! intracellular anatomical structure
 intersection_of: has_target_start_location GO:0005576 ! extracellular region
 
@@ -381495,7 +381495,7 @@ comment: Note that epinephrine and norepinephrine are ligands for the same recep
 synonym: "response to noradrenaline stimulus" EXACT [GOC:mah]
 synonym: "response to norepinephrine stimulus" EXACT [GOC:dos]
 intersection_of: GO:0050896 ! response to stimulus
-intersection_of: has_input CHEBI:33569 ! noradrenaline
+intersection_of: has_input CHEBI:72587 ! (R)-noradrenaline
 created_by: mah
 creation_date: 2010-09-13T03:31:53Z
 
@@ -381507,7 +381507,7 @@ def: "Any process that results in a change in state or activity of a cell (in te
 comment: Note that epinephrine and norepinephrine are ligands for the same receptors, and there are multiple adrenergic receptors.
 synonym: "cellular response to noradrenaline stimulus" EXACT [GOC:mah]
 intersection_of: GO:0070887 ! cellular response to chemical stimulus
-intersection_of: has_input CHEBI:33569 ! noradrenaline
+intersection_of: has_input CHEBI:72587 ! (R)-noradrenaline
 created_by: mah
 creation_date: 2010-09-13T03:33:32Z
 
@@ -420867,7 +420867,7 @@ namespace: biological_process
 def: "The vesicular release of noradrenaline (norepinephrine) a presynapse, across a chemical synapse, the subsequent activation of noradrenaline receptors at the postsynapse of a target cell (neuron, muscle, or secretory cell) and the effects of this activation on the postsynaptic membrane potential and ionic composition of the postsynaptic cytosol. This process encompasses both spontaneous and evoked release of neurotransmitter and all parts of synaptic vesicle exocytosis. Evoked transmission starts with the arrival of an action potential at the presynapse." [GOC:dos, GOC:dph]
 synonym: "noradrenergic synaptic transmission" EXACT []
 is_a: GO:0007268 ! chemical synaptic transmission
-relationship: has_participant CHEBI:33569 ! noradrenaline
+relationship: has_participant CHEBI:72587 ! (R)-noradrenaline
 created_by: dos
 creation_date: 2017-07-05T14:36:55Z
 
@@ -473010,7 +473010,7 @@ namespace: biological_process
 def: "The chemical reactions and pathways involving bacitracin A." [GOC:TermGenie, GOC:yaf, UniPathway:UPA00179]
 synonym: "bacitracin A metabolism" EXACT [GOC:TermGenie]
 intersection_of: GO:0008152 ! metabolic process
-intersection_of: has_primary_input_or_output CHEBI:35862 ! bacitracin A
+intersection_of: has_primary_input_or_output CHEBI:184381 ! bacitracin A zwitterion
 created_by: yaf
 creation_date: 2012-07-11T03:15:56Z
 
@@ -473023,7 +473023,7 @@ synonym: "bacitracin A breakdown" EXACT [GOC:TermGenie]
 synonym: "bacitracin A catabolism" EXACT [GOC:TermGenie]
 synonym: "bacitracin A degradation" EXACT [GOC:TermGenie]
 intersection_of: GO:0009056 ! catabolic process
-intersection_of: has_primary_input CHEBI:35862 ! bacitracin A
+intersection_of: has_primary_input CHEBI:184381 ! bacitracin A zwitterion
 created_by: yaf
 creation_date: 2012-07-11T03:16:20Z
 
@@ -473037,7 +473037,7 @@ synonym: "bacitracin A biosynthesis" EXACT [GOC:TermGenie]
 synonym: "bacitracin A formation" EXACT [GOC:TermGenie]
 synonym: "bacitracin A synthesis" EXACT [GOC:TermGenie]
 intersection_of: GO:0009058 ! biosynthetic process
-intersection_of: has_primary_output CHEBI:35862 ! bacitracin A
+intersection_of: has_primary_output CHEBI:184381 ! bacitracin A zwitterion
 created_by: yaf
 creation_date: 2012-07-11T03:16:27Z
 
@@ -529151,7 +529151,7 @@ name: response to kainic acid
 namespace: biological_process
 def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a kainic acid stimulus." [GO_REF:0000071, GOC:TermGenie, PMID:17443789]
 intersection_of: GO:0050896 ! response to stimulus
-intersection_of: has_input CHEBI:31746 ! kainic acid
+intersection_of: has_input CHEBI:156548 ! kainate(1-)
 created_by: sl
 creation_date: 2015-06-18T22:42:52Z
 
@@ -529161,7 +529161,7 @@ name: cellular response to kainic acid
 namespace: biological_process
 def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a kainic acid stimulus." [GO_REF:0000071, GOC:TermGenie, PMID:17443789]
 intersection_of: GO:0070887 ! cellular response to chemical stimulus
-intersection_of: has_input CHEBI:31746 ! kainic acid
+intersection_of: has_input CHEBI:156548 ! kainate(1-)
 created_by: sl
 creation_date: 2015-06-18T22:42:58Z