Merge pull request #29630 from geneontology/issue-29487

obsoleted term fixes #29487

src/ontology/go-edit.obo

@@ -53330,7 +53330,6 @@ def: "A collagen heterotrimer containing type IV alpha chains; [alpha1(IV)]2alph
 xref: Wikipedia:Collagen_type_IV
 is_a: GO:0005581 ! collagen trimer
 is_a: GO:0098642 ! network-forming collagen trimer
-is_a: GO:0098651 ! basement membrane collagen trimer
 relationship: part_of GO:0005604 ! basement membrane
 relationship: part_of GO:0098645 ! collagen network
 
@@ -421742,13 +421741,12 @@ is_a: GO:0019899 ! enzyme binding
 
 [Term]
 id: GO:0098651
-name: basement membrane collagen trimer
+name: obsolete basement membrane collagen trimer
 namespace: cellular_component
-def: "Any collagen timer that is part of a basement membrane." [GOC:dos, PMID:21421911]
-intersection_of: GO:0005581 ! collagen trimer
-intersection_of: part_of GO:0005604 ! basement membrane
-relationship: part_of GO:0005604 ! basement membrane
-relationship: part_of GO:0062023 ! collagen-containing extracellular matrix
+def: "OBSOLETE. Any collagen timer that is part of a basement membrane." [GOC:dos, PMID:21421911]
+comment: This term was obsoleted because it is an unnecessary grouping class.
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29487" xsd:anyURI
+is_obsolete: true
 
 [Term]
 id: GO:0098652
@@ -578615,7 +578613,7 @@ name: collagen type XIX trimer
 namespace: cellular_component
 def: "A collagen homotrimer made of three alpha1(XIX) collagen chains, each presenting interrupted triple helical collagen domains. Localizes to basement membrane ECMs, not known to associate with any fibrillar collagens that are predominantly found in the interstitial extracellular matrix." [PMID:10585282, PMID:12579531, PMID:12788917, PMID:17876790, PMID:31823868, PMID:35346795, PMID:9403723]
 comment: The collagen XIX trimer is often classified as a FACIT collagen trimer (which stands for Fibril Associated Collagens with Interrupted Triple helices) because of the presence of interrupted triple helical collagen domains, similar to other FACIT members. However, evidence show that collagen XIX localizes to basement membrane ECMs, and none of the basement membrane collagens are fibrillar.
-is_a: GO:0098651 ! basement membrane collagen trimer
+is_a: GO:0005581 ! collagen trimer
 relationship: part_of GO:0005604 ! basement membrane
 property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29569" xsd:anyURI
 created_by: bhm