Skip to content

Commit

Permalink
accept the snapshot version of the world
Browse files Browse the repository at this point in the history
  • Loading branch information
@kltm
kltm committed Feb 1, 2020
1 parent 0a0bac7 commit 39c7206
Showing 1 changed file with 11 additions and 13 deletions.
24 changes: 11 additions & 13 deletions Jenkinsfile
View file
Original file line number Diff line number Diff line change
Expand Up @@ -1257,24 +1257,12 @@ pipeline {
sh 'svn --non-interactive --ignore-externals --depth files checkout svn+ssh://ext.geneontology.org/share/go/svn/trunk/gene-associations $WORKSPACE/goannsvn'

// Copy the files over to the right spot.
// 45 items.
// 39 items.
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/aspgd.gaf.gz $WORKSPACE/goannsvn/gene_association.aspgd.gz'
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/cgd.gaf.gz $WORKSPACE/goannsvn/gene_association.cgd.gz'
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/dictybase.gaf.gz $WORKSPACE/goannsvn/gene_association.dictyBase.gz'
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/ecocyc.gaf.gz $WORKSPACE/goannsvn/gene_association.ecocyc.gz'
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/fb.gaf.gz $WORKSPACE/goannsvn/gene_association.fb.gz'
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/gramene_oryza.gaf.gz $WORKSPACE/goannsvn/gene_association.gramene_oryza.gz'
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/jcvi.gaf.gz $WORKSPACE/goannsvn/gene_association.jcvi.gz'
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/mgi.gaf.gz $WORKSPACE/goannsvn/gene_association.mgi.gz'
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/pombase.gaf.gz $WORKSPACE/goannsvn/gene_association.pombase.gz'
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/pseudocap.gaf.gz $WORKSPACE/goannsvn/gene_association.pseudocap.gz'
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/reactome.gaf.gz $WORKSPACE/goannsvn/gene_association.reactome.gz'
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/rgd.gaf.gz $WORKSPACE/goannsvn/gene_association.rgd.gz'
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/sgd.gaf.gz $WORKSPACE/goannsvn/gene_association.sgd.gz'
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/sgn.gaf.gz $WORKSPACE/goannsvn/gene_association.sgn.gz'
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/tair.gaf.gz $WORKSPACE/goannsvn/gene_association.tair.gz'
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/wb.gaf.gz $WORKSPACE/goannsvn/gene_association.wb.gz'
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/zfin.gaf.gz $WORKSPACE/goannsvn/gene_association.zfin.gz'
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/genedb_lmajor.gaf.gz $WORKSPACE/goannsvn/gene_association.GeneDB_Lmajor.gz'
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/genedb_pfalciparum.gaf.gz $WORKSPACE/goannsvn/gene_association.GeneDB_Pfalciparum.gz'
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/genedb_tbrucei.gaf.gz $WORKSPACE/goannsvn/gene_association.GeneDB_Tbrucei.gz'
Expand All @@ -1298,6 +1286,16 @@ pipeline {
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/goa_pig.gaf.gz $WORKSPACE/goannsvn/goa_pig.gaf.gz'
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/goa_pig_isoform.gaf.gz $WORKSPACE/goannsvn/goa_pig_isoform.gaf.gz'
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/goa_pig_rna.gaf.gz $WORKSPACE/goannsvn/goa_pig_rna.gaf.gz'
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/mgi.gaf.gz $WORKSPACE/goannsvn/gene_association.mgi.gz'
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/pombase.gaf.gz $WORKSPACE/goannsvn/gene_association.pombase.gz'
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/pseudocap.gaf.gz $WORKSPACE/goannsvn/gene_association.pseudocap.gz'
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/reactome.gaf.gz $WORKSPACE/goannsvn/gene_association.reactome.gz'
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/rgd.gaf.gz $WORKSPACE/goannsvn/gene_association.rgd.gz'
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/sgd.gaf.gz $WORKSPACE/goannsvn/gene_association.sgd.gz'
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/sgn.gaf.gz $WORKSPACE/goannsvn/gene_association.sgn.gz'
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/tair.gaf.gz $WORKSPACE/goannsvn/gene_association.tair.gz'
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/wb.gaf.gz $WORKSPACE/goannsvn/gene_association.wb.gz'
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/zfin.gaf.gz $WORKSPACE/goannsvn/gene_association.zfin.gz'
sh 'cp $WORKSPACE/mnt/$BRANCH_NAME/annotations/goa_uniprot_all_noiea.gaf.gz $WORKSPACE/goannsvn/goa_uniprot_all_noiea.gaf.gz'

// Descend and commit (all files).
Expand Down

0 comments on commit 39c7206

Please sign in to comment.