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drop path; work on #158
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kltm committed Jan 29, 2020
1 parent be4ca67 commit 4a6a4d7
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4 changes: 2 additions & 2 deletions Jenkinsfile
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Expand Up @@ -415,12 +415,12 @@ pipeline {

// The actual command.
//sh 'java -jar biopax2go.jar -b Homo-sapiens.owl -reacto ./REACTO -c catalog-v001-for-noctua.xml -lego http://skyhook.berkeleybop.org/issue-158-reactome-ontology/ontology/extensions/go-lego.owl'
sh 'java -jar biopax2go.jar -b Homo_sapiens.owl -reacto ./REACTO -lego http://current.geneontology.org/ontology/extensions/go-lego.owl'
sh 'java -jar biopax2go.jar -b Homo_sapiens.owl -reacto ./reacto.owl -lego http://current.geneontology.org/ontology/extensions/go-lego.owl'

// Make sure that we copy any files there,
// including the core dump of produced.
withCredentials([file(credentialsId: 'skyhook-private-key', variable: 'SKYHOOK_IDENTITY')]) {
sh 'scp -o StrictHostKeyChecking=no -o IdentitiesOnly=true -o IdentityFile=$SKYHOOK_IDENTITY -r ./REACTO/* [email protected]:/home/skyhook/$BRANCH_NAME/ontology/extensions/'
sh 'scp -o StrictHostKeyChecking=no -o IdentitiesOnly=true -o IdentityFile=$SKYHOOK_IDENTITY -r ./reacto.owl [email protected]:/home/skyhook/$BRANCH_NAME/ontology/extensions/'
}
}
}
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