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1. gatk4-exome-analysis-pipeline gatk4-exome-analysis-pipeline Public

   Forked from gatk-workflows/gatk4-exome-analysis-pipeline

   This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and Indel discovery in human exome sequencing data.

   WDL

2. gatk4-genome-processing-pipeline gatk4-genome-processing-pipeline Public

   Forked from gatk-workflows/gatk4-genome-processing-pipeline

   Workflows used for processing whole genome sequence data + germline variant calling.

   WDL

3. gatk4-germline-snps-indels gatk4-germline-snps-indels Public

   Forked from gatk-workflows/gatk4-germline-snps-indels

   Workflows for germline short variant discovery with GATK4

   WDL

4. tasks tasks Public

   Forked from biowdl/tasks

   A collection of reusable WDL tasks. Category:Other

   WDL

5. SUPPA SUPPA Public

   Forked from comprna/SUPPA

   SUPPA2: Fast quantification of differential splicing

   Python

6. sawfish sawfish Public

   Forked from PacificBiosciences/sawfish

   Structural variant discovery and genotyping from mapped PacBio HiFi data