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  1. open2c/distiller-nf open2c/distiller-nf Public

    A modular Hi-C mapping pipeline

    Groovy 87 24

  2. open2c/pairtools open2c/pairtools Public

    Extract 3D contacts (.pairs) from sequencing alignments

    Python 104 32

  3. open2c/cooltools open2c/cooltools Public

    The tools for your .cool's

    Jupyter Notebook 140 51

  4. open2c/looplib open2c/looplib Public

    A library to analyse the structure of 1d loops and simulate loop extrusion by loop extruding factors.

    Cython 10 6