Use new --attempts flag

instead of soon will be deprecated flags --max_non_preemptible_tries and --maxwq_preemptible_tries
googlegenomics · Jul 11, 2019 · aca8701 · aca8701
1 parent e693d8d
commit aca8701
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/gcp_deepvariant_runner.py b/gcp_deepvariant_runner.py
@@ -514,8 +514,9 @@ def _set_computational_flags_based_on_bam_size(pipeline_args):
   # Following flags are independent of BAM file category.
   pipeline_args.gcsfuse = True
   pipeline_args.preemptible = True
-  pipeline_args.max_preemptible_tries=2
-  pipeline_args.max_non_preemptible_tries=1
+  pipeline_args.attempts = 2
+  pipeline_args.max_preemptible_tries = 0
+  pipeline_args.max_non_preemptible_tries = 0
   if pipeline_args.gvcf_outfile:
     pipeline_args.postprocess_variants_disk_gb = _POSTPROCESS_VARIANTS_DISK_GVCF