Merge pull request #78 from grillazz/77-switch-to-lifespan

77 switch to lifespan

app/logging.py

@@ -18,4 +18,6 @@ def get_logger(self):
 
 class RichConsoleHandler(RichHandler):
     def __init__(self, width=200, style=None, **kwargs):
-        super().__init__(console=Console(color_system="256", width=width, style=style), **kwargs)
+        super().__init__(
+            console=Console(color_system="256", width=width, style=style), **kwargs
+        )

app/main.py

@@ -1,6 +1,6 @@
 from fastapi import Depends, FastAPI
 
-from app.config import  settings
+from app.config import settings
 from app.logging import AppLogger
 from app.redis import init_redis_pool
 from app.routers import smiles_router

app/redis.py

@@ -18,4 +18,4 @@ async def init_redis_pool() -> redis.Redis:
 #         global_settings.redis_url.unicode_string(),
 #         encoding="utf-8",
 #         decode_responses=True,
-#     )
+#     )

app/routers.py

@@ -46,11 +46,16 @@ async def get_and_compare(compound: str, redis_hash: str):
     mol = RDKFingerprint(MolFromSmiles(compound))
 
     mol_hash = await main.app.state.mols_repo.get_all(redis_hash)
-    similarity = {smile: FingerprintSimilarity(CreateFromBitString(fp), mol) for smile, fp in mol_hash.items()}
+    similarity = {
+        smile: FingerprintSimilarity(CreateFromBitString(fp), mol)
+        for smile, fp in mol_hash.items()
+    }
 
     return {
         "number_of_smiles_to_compare": len(similarity),
-        "similarity": dict(sorted(similarity.items(), key=lambda item: item[1], reverse=True)),
+        "similarity": dict(
+            sorted(similarity.items(), key=lambda item: item[1], reverse=True)
+        ),
     }
 
 

app/schemas.py

@@ -73,7 +73,9 @@ class Config:
                                     "source": "openeye.com",
                                     "release": "2019.06.18",
                                 },
-                                "value": {"sval": "CSC1=NC2=NN=C(C(=O)N2N1)[N+](=O)[O-]"},
+                                "value": {
+                                    "sval": "CSC1=NC2=NN=C(C(=O)N2N1)[N+](=O)[O-]"
+                                },
                             },
                         ],
                         "count": {},
@@ -96,7 +98,9 @@ class Config:
                                     "source": "openeye.com",
                                     "release": "2019.06.18",
                                 },
-                                "value": {"sval": "CCS(=O)(=O)N1CC(C1)(CC#N)N2C=C(C=N2)C3=C4C=CNC4=NC=N3"},
+                                "value": {
+                                    "sval": "CCS(=O)(=O)N1CC(C1)(CC#N)N2C=C(C=N2)C3=C4C=CNC4=NC=N3"
+                                },
                             },
                         ],
                         "count": {},

pyproject.toml

@@ -9,8 +9,8 @@ packages = [{include = "fastapi_redis"}]
 [tool.poetry.dependencies]
 python = "^3.12"
 fastapi = "^0.110.0"
-pydantic = {version = "2.6.1", extras = ["email"]}
-pydantic-settings = "2.2.0"
+pydantic = {version = "2.6.4", extras = ["email"]}
+pydantic-settings = "2.2.1"
 uvicorn = "^0.27.1"
 redis = "^5.0.2"
 wurlitzer = "^3.0.3"

tests/test_api.py

@@ -17,7 +17,9 @@
         ),
     ),
 )
-async def test_set_fields_on_hash(client, get_payload, response: dict, status_code: int):
+async def test_set_fields_on_hash(
+    client, get_payload, response: dict, status_code: int
+):
     post_response = await client.post(
         f"/smiles/add-to-hash?redis_hash={global_settings.redis_hash}",
         json=get_payload,