Cleaning up linting

CONTRIBUTING.md

@@ -296,6 +296,6 @@ you will need these packages with `tlmgr` in order to build the PDF:
 -   `tocbibind`
 
 [diagrams]: https://www.diagrams.net/
-[marthas_rules]: https://journals.sagepub.com/doi/10.1177/088610998600100206
-[ivy]: https://www.dmulholl.com/docs/ivy/main/
 [glosario]: https://glosario.carpentries.org/
+[ivy]: https://www.dmulholl.com/docs/ivy/main/
+[marthas_rules]: https://journals.sagepub.com/doi/10.1177/088610998600100206

LICENSE.md

@@ -119,7 +119,7 @@ CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
 
 *The Hippocratic License is an [Ethical Source license][ethical_source].*
 
-[udhr]: https://www.un.org/en/universal-declaration-human-rights/
 [ethical_source]: https://ethicalsource.dev
-[ungc]: https://www.unglobalcompact.org/what-is-gc/mission/principles
 [hippocratic_license]: https://firstdonoharm.dev/
+[udhr]: https://www.un.org/en/universal-declaration-human-rights/
+[ungc]: https://www.unglobalcompact.org/what-is-gc/mission/principles

config.py

@@ -81,11 +81,6 @@
     "*.xml",
 ]
 
-# Things to ignore when linting.
-unreferenced = [
-    ".pytest_cache/*"
-]
-
 # Debug.
 debug = False
 

docs/archive/index.html

@@ -4,7 +4,7 @@
   <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
   <meta name="viewport" content="width=device-width, initial-scale=1">
   <meta name="repo" content="https://github.com/gvwilson/sd4ds">
-  <meta name="build_date" content="2023-06-04">
+  <meta name="build_date" content="2023-06-05">
   <meta name="template" content="default">
   <meta name="major" content="Chapter 9">
   <meta name="has_slides" content="true">

docs/archive/slides/index.html

@@ -4,7 +4,7 @@
   <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
   <meta name="viewport" content="width=device-width, initial-scale=1">
   <meta name="repo" content="https://github.com/gvwilson/sd4ds">
-  <meta name="build_date" content="2023-06-04">
+  <meta name="build_date" content="2023-06-05">
   <meta name="template" content="slides">
   <meta name="major" content="Chapter 9">
 
@@ -412,6 +412,7 @@ <h1>A File Archiver</h1>
 [ctan]: https://www.ctan.org/
 [cypress]: https://www.cypress.io/
 [db_tutorial]: https://cstack.github.io/db_tutorial/
+[diagrams]: https://www.diagrams.net/
 [dresser_christopher]: https://en.wikipedia.org/wiki/Christopher_Dresser
 [ejs]: https://ejs.co/
 [email]: mailto:[email protected]
@@ -424,7 +425,7 @@ <h1>A File Archiver</h1>
 [git]: https://git-scm.com/
 [git_man_page_generator]: https://git-man-page-generator.lokaltog.net/
 [gitlet]: http://gitlet.maryrosecook.com/
-[glosario]: https://github.com/carpentries/glosario
+[glosario]: https://glosario.carpentries.org/
 [gnu_make]: https://www.gnu.org/software/make/
 [gutenberg]: https://www.gutenberg.org/
 [harrelson_chris]: https://twitter.com/chrishtr

docs/bib/index.html

@@ -4,7 +4,7 @@
   <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
   <meta name="viewport" content="width=device-width, initial-scale=1">
   <meta name="repo" content="https://github.com/gvwilson/sd4ds">
-  <meta name="build_date" content="2023-06-04">
+  <meta name="build_date" content="2023-06-05">
   <meta name="template" content="default">
   <meta name="major" content="Appendix A">
 

docs/binary/index.html

@@ -4,7 +4,7 @@
   <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
   <meta name="viewport" content="width=device-width, initial-scale=1">
   <meta name="repo" content="https://github.com/gvwilson/sd4ds">
-  <meta name="build_date" content="2023-06-04">
+  <meta name="build_date" content="2023-06-05">
   <meta name="template" content="default">
   <meta name="major" content="Chapter 17">
   <meta name="has_slides" content="true">
@@ -347,7 +347,7 @@ <h1>Chapter 17: Binary Data</h1>
 
 
 <p class="definitions">
-  Terms defined: <a class="gl-ref" href="../glossary/#absolute_error" markdown="1">absolute error</a>, <a class="gl-ref" href="../glossary/#ansi_encoding" markdown="1">ANSI character encoding</a>, <a class="gl-ref" href="../glossary/#ascii" markdown="1">ASCII character encoding</a>, <a class="gl-ref" href="../glossary/#big_endian" markdown="1">big endian</a>, <a class="gl-ref" href="../glossary/#bit_mask" markdown="1">bit mask</a>, <a class="gl-ref" href="../glossary/#bit_shift" markdown="1">bit shifting</a>, <a class="gl-ref" href="../glossary/#bitwise_operation" markdown="1">bitwise operation</a>, <a class="gl-ref" href="../glossary/#boxed_value" markdown="1">boxed value</a>, <a class="gl-ref" href="../glossary/#code_point" markdown="1">code point</a>, <a class="gl-ref" href="../glossary/#control_code" markdown="1">control code</a>, <a class="gl-ref" href="../glossary/#exclusive_or" markdown="1">exclusive or</a>, <a class="gl-ref" href="../glossary/#exponent" markdown="1">exponent</a>, <a class="gl-ref" href="../glossary/#garbage_collection" markdown="1">garbage collection</a>, <a class="gl-ref" href="../glossary/#hexadecimal" markdown="1">hexadecimal</a>, <a class="gl-ref" href="../glossary/#introspection" markdown="1">introspection</a>, <a class="gl-ref" href="../glossary/#little_endian" markdown="1">little endian</a>, <a class="gl-ref" href="../glossary/#mantissa" markdown="1">mantissa</a>, <a class="gl-ref" href="../glossary/#relative_error" markdown="1">relative error</a>, <a class="gl-ref" href="../glossary/#sign_magnitude" markdown="1">sign and magnitude</a>, <a class="gl-ref" href="../glossary/#twos_complement" markdown="1">two's complement</a>, <a class="gl-ref" href="../glossary/#unicode" markdown="1">Unicode</a>, <a class="gl-ref" href="../glossary/#utf_32" markdown="1">UTF-32</a>, <a class="gl-ref" href="../glossary/#utf_8" markdown="1">UTF-8</a>, <a class="gl-ref" href="../glossary/#variable_length_encoding" markdown="1">variable-length encoding</a>, <a class="gl-ref" href="../glossary/#word_memory" markdown="1">word (of memory)</a>
+  Terms defined: <a class="gl-ref" href="../glossary/#absolute_error" markdown="1">absolute error</a>, <a class="gl-ref" href="../glossary/#ansi_encoding" markdown="1">ANSI character encoding</a>, <a class="gl-ref" href="../glossary/#ascii" markdown="1">ASCII character encoding</a>, <a class="gl-ref" href="../glossary/#big_endian" markdown="1">big endian</a>, <a class="gl-ref" href="../glossary/#bit_mask" markdown="1">bit mask</a>, <a class="gl-ref" href="../glossary/#bit_shift" markdown="1">bit shifting</a>, <a class="gl-ref" href="../glossary/#bitwise_operation" markdown="1">bitwise operation</a>, <a class="gl-ref" href="../glossary/#boxed_value" markdown="1">boxed value</a>, <a class="gl-ref" href="../glossary/#buffer" markdown="1">buffer</a>, <a class="gl-ref" href="../glossary/#code_point" markdown="1">code point</a>, <a class="gl-ref" href="../glossary/#control_code" markdown="1">control code</a>, <a class="gl-ref" href="../glossary/#exclusive_or" markdown="1">exclusive or</a>, <a class="gl-ref" href="../glossary/#exponent" markdown="1">exponent</a>, <a class="gl-ref" href="../glossary/#garbage_collection" markdown="1">garbage collection</a>, <a class="gl-ref" href="../glossary/#hexadecimal" markdown="1">hexadecimal</a>, <a class="gl-ref" href="../glossary/#introspection" markdown="1">introspection</a>, <a class="gl-ref" href="../glossary/#little_endian" markdown="1">little endian</a>, <a class="gl-ref" href="../glossary/#mantissa" markdown="1">mantissa</a>, <a class="gl-ref" href="../glossary/#relative_error" markdown="1">relative error</a>, <a class="gl-ref" href="../glossary/#sign_magnitude" markdown="1">sign and magnitude</a>, <a class="gl-ref" href="../glossary/#twos_complement" markdown="1">two's complement</a>, <a class="gl-ref" href="../glossary/#unicode" markdown="1">Unicode</a>, <a class="gl-ref" href="../glossary/#utf_32" markdown="1">UTF-32</a>, <a class="gl-ref" href="../glossary/#utf_8" markdown="1">UTF-8</a>, <a class="gl-ref" href="../glossary/#variable_length_encoding" markdown="1">variable-length encoding</a>, <a class="gl-ref" href="../glossary/#word_memory" markdown="1">word (of memory)</a>
 </p>
 
 
@@ -985,7 +985,8 @@ <h2 id="binary-binary">Section 17.4: And Now, Persistence</h2>
 </code></pre></div>
 </div>
 <p>The unpacking function is analogous.
-We break the buffer into a header that&rsquo;s exactly four bytes long
+We break the <a class="gl-ref" href="../glossary/#buffer" markdown="1">buffer</a>
+into a header that&rsquo;s exactly four bytes long
 (i.e., the right size for an integer)
 and a body made up of whatever&rsquo;s left.
 We then unpack the header,

docs/binary/slides/index.html

@@ -4,7 +4,7 @@
   <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
   <meta name="viewport" content="width=device-width, initial-scale=1">
   <meta name="repo" content="https://github.com/gvwilson/sd4ds">
-  <meta name="build_date" content="2023-06-04">
+  <meta name="build_date" content="2023-06-05">
   <meta name="template" content="slides">
   <meta name="major" content="Chapter 17">
 
@@ -468,6 +468,7 @@ <h1>Binary Data</h1>
 [ctan]: https://www.ctan.org/
 [cypress]: https://www.cypress.io/
 [db_tutorial]: https://cstack.github.io/db_tutorial/
+[diagrams]: https://www.diagrams.net/
 [dresser_christopher]: https://en.wikipedia.org/wiki/Christopher_Dresser
 [ejs]: https://ejs.co/
 [email]: mailto:[email protected]
@@ -480,7 +481,7 @@ <h1>Binary Data</h1>
 [git]: https://git-scm.com/
 [git_man_page_generator]: https://git-man-page-generator.lokaltog.net/
 [gitlet]: http://gitlet.maryrosecook.com/
-[glosario]: https://github.com/carpentries/glosario
+[glosario]: https://glosario.carpentries.org/
 [gnu_make]: https://www.gnu.org/software/make/
 [gutenberg]: https://www.gutenberg.org/
 [harrelson_chris]: https://twitter.com/chrishtr

docs/build/index.html

@@ -4,7 +4,7 @@
   <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
   <meta name="viewport" content="width=device-width, initial-scale=1">
   <meta name="repo" content="https://github.com/gvwilson/sd4ds">
-  <meta name="build_date" content="2023-06-04">
+  <meta name="build_date" content="2023-06-05">
   <meta name="template" content="default">
   <meta name="major" content="Chapter 19">
   <meta name="has_slides" content="true">

docs/build/slides/index.html

@@ -4,7 +4,7 @@
   <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
   <meta name="viewport" content="width=device-width, initial-scale=1">
   <meta name="repo" content="https://github.com/gvwilson/sd4ds">
-  <meta name="build_date" content="2023-06-04">
+  <meta name="build_date" content="2023-06-05">
   <meta name="template" content="slides">
   <meta name="major" content="Chapter 19">
 
@@ -424,6 +424,7 @@ <h1>A Build Manager</h1>
 [ctan]: https://www.ctan.org/
 [cypress]: https://www.cypress.io/
 [db_tutorial]: https://cstack.github.io/db_tutorial/
+[diagrams]: https://www.diagrams.net/
 [dresser_christopher]: https://en.wikipedia.org/wiki/Christopher_Dresser
 [ejs]: https://ejs.co/
 [email]: mailto:[email protected]
@@ -436,7 +437,7 @@ <h1>A Build Manager</h1>
 [git]: https://git-scm.com/
 [git_man_page_generator]: https://git-man-page-generator.lokaltog.net/
 [gitlet]: http://gitlet.maryrosecook.com/
-[glosario]: https://github.com/carpentries/glosario
+[glosario]: https://glosario.carpentries.org/
 [gnu_make]: https://www.gnu.org/software/make/
 [gutenberg]: https://www.gutenberg.org/
 [harrelson_chris]: https://twitter.com/chrishtr

docs/check/index.html

@@ -4,7 +4,7 @@
   <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
   <meta name="viewport" content="width=device-width, initial-scale=1">
   <meta name="repo" content="https://github.com/gvwilson/sd4ds">
-  <meta name="build_date" content="2023-06-04">
+  <meta name="build_date" content="2023-06-05">
   <meta name="template" content="default">
   <meta name="major" content="Chapter 11">
   <meta name="has_slides" content="true">

docs/check/slides/index.html

@@ -4,7 +4,7 @@
   <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
   <meta name="viewport" content="width=device-width, initial-scale=1">
   <meta name="repo" content="https://github.com/gvwilson/sd4ds">
-  <meta name="build_date" content="2023-06-04">
+  <meta name="build_date" content="2023-06-05">
   <meta name="template" content="slides">
   <meta name="major" content="Chapter 11">
 
@@ -459,6 +459,7 @@ <h1>Main Title</h1>
 [ctan]: https://www.ctan.org/
 [cypress]: https://www.cypress.io/
 [db_tutorial]: https://cstack.github.io/db_tutorial/
+[diagrams]: https://www.diagrams.net/
 [dresser_christopher]: https://en.wikipedia.org/wiki/Christopher_Dresser
 [ejs]: https://ejs.co/
 [email]: mailto:[email protected]
@@ -471,7 +472,7 @@ <h1>Main Title</h1>
 [git]: https://git-scm.com/
 [git_man_page_generator]: https://git-man-page-generator.lokaltog.net/
 [gitlet]: http://gitlet.maryrosecook.com/
-[glosario]: https://github.com/carpentries/glosario
+[glosario]: https://glosario.carpentries.org/
 [gnu_make]: https://www.gnu.org/software/make/
 [gutenberg]: https://www.gutenberg.org/
 [harrelson_chris]: https://twitter.com/chrishtr

docs/conduct/index.html

@@ -4,7 +4,7 @@
   <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
   <meta name="viewport" content="width=device-width, initial-scale=1">
   <meta name="repo" content="https://github.com/gvwilson/sd4ds">
-  <meta name="build_date" content="2023-06-04">
+  <meta name="build_date" content="2023-06-05">
   <meta name="template" content="default">
   <meta name="major" content="Appendix E">
 

docs/contents/index.html

@@ -4,7 +4,7 @@
   <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
   <meta name="viewport" content="width=device-width, initial-scale=1">
   <meta name="repo" content="https://github.com/gvwilson/sd4ds">
-  <meta name="build_date" content="2023-06-04">
+  <meta name="build_date" content="2023-06-05">
   <meta name="template" content="default">
   <meta name="major" content="Appendix I">
 

docs/contrib/index.html

@@ -4,7 +4,7 @@
   <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
   <meta name="viewport" content="width=device-width, initial-scale=1">
   <meta name="repo" content="https://github.com/gvwilson/sd4ds">
-  <meta name="build_date" content="2023-06-04">
+  <meta name="build_date" content="2023-06-05">
   <meta name="template" content="default">
   <meta name="major" content="Appendix F">
 
@@ -333,7 +333,7 @@ <h1>Appendix F: Contributing</h1>
           <p>Contributions are very welcome;
 please contact us by email or by filing an issue on this site.
 All contributors must abide by our Code of Conduct.</p>
-<h2 id="contributing-decisions">Section F.1: Making Decisions</h2>
+<h2 id="contrib-decisions">Section F.1: Making Decisions</h2>
 <p>This project uses <a href="https://journals.sagepub.com/doi/10.1177/088610998600100206">Martha&rsquo;s Rules</a> for consensus decision making:</p>
 <ol>
 <li>
@@ -385,11 +385,6 @@ <h2 id="contributing-decisions">Section F.1: Making Decisions</h2>
     the sponsor for further work.</p>
 </li>
 </ol>
-<h2 id="contributing-formatting">Section F.2: Formatting</h2>
-<p>This material uses <a href="https://www.dmulholl.com/docs/ivy/main/">Ivy</a> with some custom extensions;
-run <code>make</code> in the root directory to get a list of available commands.
-Please see <code>CONTRIBUTING.md</code> in the root directory of <a href="https://github.com/gvwilson/sd4ds/">our Git repository</a>
-for more information.</p>
         </main>
       </div>
     </div>

docs/credits/index.html

@@ -4,7 +4,7 @@
   <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
   <meta name="viewport" content="width=device-width, initial-scale=1">
   <meta name="repo" content="https://github.com/gvwilson/sd4ds">
-  <meta name="build_date" content="2023-06-04">
+  <meta name="build_date" content="2023-06-05">
   <meta name="template" content="default">
   <meta name="major" content="Appendix H">
 

docs/db/index.html

@@ -4,7 +4,7 @@
   <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
   <meta name="viewport" content="width=device-width, initial-scale=1">
   <meta name="repo" content="https://github.com/gvwilson/sd4ds">
-  <meta name="build_date" content="2023-06-04">
+  <meta name="build_date" content="2023-06-05">
   <meta name="template" content="default">
   <meta name="major" content="Chapter 18">
   <meta name="has_slides" content="true">

docs/db/slides/index.html

@@ -4,7 +4,7 @@
   <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
   <meta name="viewport" content="width=device-width, initial-scale=1">
   <meta name="repo" content="https://github.com/gvwilson/sd4ds">
-  <meta name="build_date" content="2023-06-04">
+  <meta name="build_date" content="2023-06-05">
   <meta name="template" content="slides">
   <meta name="major" content="Chapter 18">
 
@@ -639,6 +639,7 @@ <h1>A Database</h1>
 [ctan]: https://www.ctan.org/
 [cypress]: https://www.cypress.io/
 [db_tutorial]: https://cstack.github.io/db_tutorial/
+[diagrams]: https://www.diagrams.net/
 [dresser_christopher]: https://en.wikipedia.org/wiki/Christopher_Dresser
 [ejs]: https://ejs.co/
 [email]: mailto:[email protected]
@@ -651,7 +652,7 @@ <h1>A Database</h1>
 [git]: https://git-scm.com/
 [git_man_page_generator]: https://git-man-page-generator.lokaltog.net/
 [gitlet]: http://gitlet.maryrosecook.com/
-[glosario]: https://github.com/carpentries/glosario
+[glosario]: https://glosario.carpentries.org/
 [gnu_make]: https://www.gnu.org/software/make/
 [gutenberg]: https://www.gutenberg.org/
 [harrelson_chris]: https://twitter.com/chrishtr

docs/debugger/index.html

@@ -4,7 +4,7 @@
   <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
   <meta name="viewport" content="width=device-width, initial-scale=1">
   <meta name="repo" content="https://github.com/gvwilson/sd4ds">
-  <meta name="build_date" content="2023-06-04">
+  <meta name="build_date" content="2023-06-05">
   <meta name="template" content="default">
   <meta name="major" content="Chapter 26">
   <meta name="has_slides" content="true">

docs/debugger/slides/index.html

@@ -4,7 +4,7 @@
   <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
   <meta name="viewport" content="width=device-width, initial-scale=1">
   <meta name="repo" content="https://github.com/gvwilson/sd4ds">
-  <meta name="build_date" content="2023-06-04">
+  <meta name="build_date" content="2023-06-05">
   <meta name="template" content="slides">
   <meta name="major" content="Chapter 26">
 
@@ -495,6 +495,7 @@ <h1>A Debugger</h1>
 [ctan]: https://www.ctan.org/
 [cypress]: https://www.cypress.io/
 [db_tutorial]: https://cstack.github.io/db_tutorial/
+[diagrams]: https://www.diagrams.net/
 [dresser_christopher]: https://en.wikipedia.org/wiki/Christopher_Dresser
 [ejs]: https://ejs.co/
 [email]: mailto:[email protected]
@@ -507,7 +508,7 @@ <h1>A Debugger</h1>
 [git]: https://git-scm.com/
 [git_man_page_generator]: https://git-man-page-generator.lokaltog.net/
 [gitlet]: http://gitlet.maryrosecook.com/
-[glosario]: https://github.com/carpentries/glosario
+[glosario]: https://glosario.carpentries.org/
 [gnu_make]: https://www.gnu.org/software/make/
 [gutenberg]: https://www.gutenberg.org/
 [harrelson_chris]: https://twitter.com/chrishtr

docs/dup/index.html

@@ -4,7 +4,7 @@
   <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
   <meta name="viewport" content="width=device-width, initial-scale=1">
   <meta name="repo" content="https://github.com/gvwilson/sd4ds">
-  <meta name="build_date" content="2023-06-04">
+  <meta name="build_date" content="2023-06-05">
   <meta name="template" content="default">
   <meta name="major" content="Chapter 2">
   <meta name="has_slides" content="true">