New scripts for 10-fold cross val

config/resnet56_09_diag.ini

@@ -7,8 +7,8 @@ pixels: 96
 n_classes: 2
 channels: 1
 subset: None
-filenames_train: ../../data/cadOWNv2_0.5mm_96x96_xy_xz_yz/subset[1234567]/*/*.pkl.gz
-filenames_validation: ../../data/cadOWNv2_0.5mm_96x96_xy_xz_yz/subset[8]/*/*.pkl.gz
+filenames_train: /media/diskB/guido/luna16/candidates_v2_0.5mm_96x96_xy_xz_yz/subset[1234567]/*/*.pkl.gz
+filenames_validation: /media/diskB/guido/luna16/candidates_v2_0.5mm_96x96_xy_xz_yz/subset[8]/*/*.pkl.gz
 data_folder: None ;not used
 
 [network]

config/resnet56_0_diag.ini

@@ -0,0 +1,53 @@
+[info]
+experiment: ResNet default settings
+name: OWN2_resnet56_0
+
+[dataset]
+pixels: 96
+n_classes: 2
+channels: 1
+subset: None
+filenames_train: /media/diskB/guido/luna16/candidates_v2_0.5mm_96x96_xy_xz_yz/subset[12345679]/*/*.pkl.gz
+filenames_validation: /media/diskB/guido/luna16/candidates_v2_0.5mm_96x96_xy_xz_yz/subset[8]/*/*.pkl.gz
+data_folder: None ;not used
+
+[network]
+architecture: resnet
+input_size: 64
+depth: 5
+branching_factor: 6
+batch_normalization: True
+batch_normalization_alpha: 0.1
+dropout: 0.25
+spatial_dropout: 0.5
+gaussian_noise: 0.05
+
+[updates]
+optimization: -
+learning_rate: 0 ;not used, see schedule
+momentum: 0.90
+l2_lambda: 0.00002
+batch_size_train: 72
+batch_size_validation: 138
+n_epochs: 240
+
+[preprocessing] ;Not used
+random_crop: 0 ;no cropping
+erode_segmentation: 11
+
+[normalization]
+zero_center: True
+mean_pixel: 0.2606236106512
+
+[augmentation]
+augment: True
+flip: True
+zoom: 0.1
+rotation: 20
+translation: 3
+
+
+[misc]
+multiprocess_load_augmentation: False
+save_every_n_epoch: 2
+n_workers_load_augmentation: 1

config/resnet56_12_diag.ini

@@ -7,8 +7,8 @@ pixels: 96
 n_classes: 2
 channels: 1
 subset: None
-filenames_train: ../../data/cadOWNv2_0.5mm_96x96_xy_xz_yz/subset[3456789]/*/*.pkl.gz
-filenames_validation: ../../data/cadOWNv2_0.5mm_96x96_xy_xz_yz/subset[0]/*/*.pkl.gz
+filenames_train: /media/diskB/guido/luna16/candidates_v2_0.5mm_96x96_xy_xz_yz/subset[3456789]/*/*.pkl.gz
+filenames_validation: /media/diskB/guido/luna16/candidates_v2_0.5mm_96x96_xy_xz_yz/subset[0]/*/*.pkl.gz
 data_folder: None ;not used
 
 [network]

config/resnet56_1_diag.ini

@@ -0,0 +1,53 @@
+[info]
+experiment: ResNet default settings
+name: OWN2_resnet56_1
+
+[dataset]
+pixels: 96
+n_classes: 2
+channels: 1
+subset: None
+filenames_train: /media/diskB/guido/luna16/candidates_v2_0.5mm_96x96_xy_xz_yz/subset[23456789]/*/*.pkl.gz
+filenames_validation: /media/diskB/guido/luna16/candidates_v2_0.5mm_96x96_xy_xz_yz/subset[0]/*/*.pkl.gz
+data_folder: None ;not used
+
+[network]
+architecture: resnet
+input_size: 64
+depth: 5
+branching_factor: 6
+batch_normalization: True
+batch_normalization_alpha: 0.1
+dropout: 0.25
+spatial_dropout: 0.5
+gaussian_noise: 0.05
+
+[updates]
+optimization: -
+learning_rate: 0 ;not used, see schedule
+momentum: 0.90
+l2_lambda: 0.00002
+batch_size_train: 72
+batch_size_validation: 138
+n_epochs: 240
+
+[preprocessing] ;Not used
+random_crop: 0 ;no cropping
+erode_segmentation: 11
+
+[normalization]
+zero_center: True
+mean_pixel: 0.2606236106512
+
+[augmentation]
+augment: True
+flip: True
+zoom: 0.1
+rotation: 20
+translation: 3
+
+
+[misc]
+multiprocess_load_augmentation: False
+save_every_n_epoch: 2
+n_workers_load_augmentation: 1

config/resnet56_2_diag.ini

@@ -0,0 +1,53 @@
+[info]
+experiment: ResNet default settings
+name: OWN2_resnet56_2
+
+[dataset]
+pixels: 96
+n_classes: 2
+channels: 1
+subset: None
+filenames_train: /media/diskB/guido/luna16/candidates_v2_0.5mm_96x96_xy_xz_yz/subset[13456789]/*/*.pkl.gz
+filenames_validation: /media/diskB/guido/luna16/candidates_v2_0.5mm_96x96_xy_xz_yz/subset[0]/*/*.pkl.gz
+data_folder: None ;not used
+
+[network]
+architecture: resnet
+input_size: 64
+depth: 5
+branching_factor: 6
+batch_normalization: True
+batch_normalization_alpha: 0.1
+dropout: 0.25
+spatial_dropout: 0.5
+gaussian_noise: 0.05
+
+[updates]
+optimization: -
+learning_rate: 0 ;not used, see schedule
+momentum: 0.90
+l2_lambda: 0.00002
+batch_size_train: 72
+batch_size_validation: 138
+n_epochs: 240
+
+[preprocessing] ;Not used
+random_crop: 0 ;no cropping
+erode_segmentation: 11
+
+[normalization]
+zero_center: True
+mean_pixel: 0.2606236106512
+
+[augmentation]
+augment: True
+flip: True
+zoom: 0.1
+rotation: 20
+translation: 3
+
+
+[misc]
+multiprocess_load_augmentation: False
+save_every_n_epoch: 2
+n_workers_load_augmentation: 1

config/resnet56_34_diag.ini

@@ -7,8 +7,8 @@ pixels: 96
 n_classes: 2
 channels: 1
 subset: None
-filenames_train: ../../data/cadOWNv2_0.5mm_96x96_xy_xz_yz/subset[0152789]/*/*.pkl.gz
-filenames_validation: ../../data/cadOWNv2_0.5mm_96x96_xy_xz_yz/subset[6]/*/*.pkl.gz
+filenames_train: /media/diskB/guido/luna16/candidates_v2_0.5mm_96x96_xy_xz_yz/subset[0152789]/*/*.pkl.gz
+filenames_validation: /media/diskB/guido/luna16/candidates_v2_0.5mm_96x96_xy_xz_yz/subset[6]/*/*.pkl.gz
 data_folder: None ;not used
 
 [network]

config/resnet56_56_diag.ini

@@ -7,8 +7,8 @@ pixels: 96
 n_classes: 2
 channels: 1
 subset: None
-filenames_train: ../../data/cadOWNv2_0.5mm_96x96_xy_xz_yz/subset[0124789]/*/*.pkl.gz
-filenames_validation: ../../data/cadOWNv2_0.5mm_96x96_xy_xz_yz/subset[3]/*/*.pkl.gz
+filenames_train: /media/diskB/guido/luna16/candidates_v2_0.5mm_96x96_xy_xz_yz/subset[0124789]/*/*.pkl.gz
+filenames_validation: /media/diskB/guido/luna16/candidates_v2_0.5mm_96x96_xy_xz_yz/subset[3]/*/*.pkl.gz
 data_folder: None ;not used
 
 [network]

config/resnet56_78_diag.ini

@@ -7,8 +7,8 @@ pixels: 96
 n_classes: 2
 channels: 1
 subset: None
-filenames_train: ../../data/cadOWNv2_0.5mm_96x96_xy_xz_yz/subset[0163459]/*/*.pkl.gz
-filenames_validation: ../../data/cadOWNv2_0.5mm_96x96_xy_xz_yz/subset[2]/*/*.pkl.gz
+filenames_train: /media/diskB/guido/luna16/candidates_v2_0.5mm_96x96_xy_xz_yz/subset[0163459]/*/*.pkl.gz
+filenames_validation: /media/diskB/guido/luna16/candidates_v2_0.5mm_96x96_xy_xz_yz/subset[2]/*/*.pkl.gz
 data_folder: None ;not used
 
 [network]

config/resnet56_9_diag.ini

@@ -0,0 +1,53 @@
+[info]
+experiment: ResNet default settings
+name: OWN2_resnet56_9
+
+[dataset]
+pixels: 96
+n_classes: 2
+channels: 1
+subset: None
+filenames_train: /media/diskB/guido/luna16/candidates_v2_0.5mm_96x96_xy_xz_yz/subset[12345670]/*/*.pkl.gz
+filenames_validation: /media/diskB/guido/luna16/candidates_v2_0.5mm_96x96_xy_xz_yz/subset[8]/*/*.pkl.gz
+data_folder: None ;not used
+
+[network]
+architecture: resnet
+input_size: 64
+depth: 5
+branching_factor: 6
+batch_normalization: True
+batch_normalization_alpha: 0.1
+dropout: 0.25
+spatial_dropout: 0.5
+gaussian_noise: 0.05
+
+[updates]
+optimization: -
+learning_rate: 0 ;not used, see schedule
+momentum: 0.90
+l2_lambda: 0.00002
+batch_size_train: 72
+batch_size_validation: 138
+n_epochs: 240
+
+[preprocessing] ;Not used
+random_crop: 0 ;no cropping
+erode_segmentation: 11
+
+[normalization]
+zero_center: True
+mean_pixel: 0.2606236106512
+
+[augmentation]
+augment: True
+flip: True
+zoom: 0.1
+rotation: 20
+translation: 3
+
+
+[misc]
+multiprocess_load_augmentation: False
+save_every_n_epoch: 2
+n_workers_load_augmentation: 1

src/deep/resnet/resnet.py

@@ -15,10 +15,10 @@
 from params import params as P
 
 LR_SCHEDULE = {
-    0: 0.012,
-    6: 0.12,
-    80: 0.012,
-    120: 0.0012,
+    0: 0.01,
+    6: 0.1,
+    100: 0.01,
+    160: 0.001,
 }
 
 PIXELS = P.INPUT_SIZE