Add resnet 4/4 script

config/default_resnet.ini

@@ -27,8 +27,8 @@ optimization: -
 learning_rate: 0 ;not used, see schedule
 momentum: 0.92
 l2_lambda: 0.00005
-batch_size_train: 36
-batch_size_validation: 80
+batch_size_train: 12
+batch_size_validation: 36
 n_epochs: 200
 
 [preprocessing] ;Not used

config/resnet44.ini

@@ -0,0 +1,53 @@
+[info]
+experiment: ResNet default settings
+name: resnet44_89
+
+[dataset]
+pixels: 96
+n_classes: 2
+channels: 1
+subset: None
+filenames_train: /scratch-shared/vdgugten/data/cadOWN_0.5mm_96x96_xy_xz_yz/subset[0123456]/*/*.pkl.gz
+filenames_validation: /scratch-shared/vdgugten/data/cadOWN_0.5mm_96x06_xy_xz_yz/subset[7]/*/*.pkl.gz
+data_folder: None ;not used
+
+[network]
+architecture: resnet
+input_size: 64
+depth: 4
+branching_factor: 4
+batch_normalization: True
+batch_normalization_alpha: 0.1
+dropout: 0.25
+spatial_dropout: 0.5
+gaussian_noise: 0.05
+
+[updates] 
+optimization: -
+learning_rate: 0 ;not used, see schedule
+momentum: 0.92
+l2_lambda: 0.00005
+batch_size_train: 128
+batch_size_validation: 256
+n_epochs: 200
+
+[preprocessing] ;Not used
+random_crop: 0 ;no cropping
+erode_segmentation: 11
+
+[normalization]
+zero_center: True
+mean_pixel: 0.2606236106512
+
+[augmentation]
+augment: True
+flip: True
+zoom: 0.1
+rotation: 20
+translation: 3
+
+
+[misc]
+multiprocess_load_augmentation: False
+save_every_n_epoch: 2
+n_workers_load_augmentation: 10

scripts/resnet_scripts/resnet44_01.sh

@@ -0,0 +1,21 @@
+#!/bin/bash
+#SBATCH -t 2-00:00:00
+#SBATCH -p gpu
+#SBATCH -c 12
+
+#Prepare python environment
+export PYTHONPATH=$HOME/pythonpackages/lib/python:$PYTHONPATH
+export PYTHONPATH=$HOME/pythonpackages/lib/python2.7/site-packages:$PYTHONPATH
+module load python/2.7.9
+module load cuda
+module load cudnn
+
+#Go to project folder
+cd $HOME/luna16/src/deep
+
+
+#Go!!!
+
+echo "starting python"
+export THEANO_FLAGS='mode=FAST_RUN,device=gpu,floatX=float32,lib.cnmem=1' 
+srun -u python train.py ../../config/default_fr3dnet.ini