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[Fixing Test Cases] Allow 0 in label image test cases #134

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merged 2 commits into from
Nov 21, 2024
+23 −14
Merged

[Fixing Test Cases] Allow 0 in label image test cases #134

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3d7003f
Updated label images for more flexible inputs
ian-coccimiglio Sep 12, 2024
b0b37fb
Reverted change to workflow_batch_process_folder_count_labels
ian-coccimiglio Sep 13, 2024
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33 changes: 21 additions & 12 deletions test_cases/map_pixel_count_of_labels.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -41,33 +41,42 @@
" [0,0,0,1,0],\n",
" ])\n",
"\n",
" assert np.array_equal(reference, result)"
" ref_zeros_are_labels = np.asarray([\n",
" [16,16,16,16,16],\n",
" [3,4,4,16,16],\n",
" [3,4,4,16,16],\n",
" [3,16,16,1,16],\n",
" [16,16,16,1,16],\n",
" ])\n",
"\n",
" assert (np.array_equal(reference, result) or np.array_equal(ref_zeros_are_labels, result))"
]
},
{
"cell_type": "code",
"execution_count": 3,
"id": "e4789ed1-dc01-46a6-80b2-dd98d8d7b875",
"metadata": {},
"outputs": [],
"outputs": [
{
"name": "stderr",
"output_type": "stream",
"text": [
"/home/ian/miniconda3/envs/heb/lib/python3.10/site-packages/pytools/persistent_dict.py:59: UserWarning: Unable to import recommended hash 'siphash24.siphash13', falling back to 'hashlib.sha256'. Run 'python3 -m pip install siphash24' to install the recommended hash.\n",
" warn(\"Unable to import recommended hash 'siphash24.siphash13', \"\n"
]
}
],
"source": [
"check(map_pixel_count_of_labels)"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "69f50302-d69f-4659-9512-4bb86db33cbc",
"metadata": {},
"outputs": [],
"source": []
}
],
"metadata": {
"kernelspec": {
"display_name": "Python 3 (ipykernel)",
"display_name": "Python [conda env:heb]",
"language": "python",
"name": "python3"
"name": "conda-env-heb-py"
},
"language_info": {
"codemirror_mode": {
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4 changes: 2 additions & 2 deletions test_cases/measure_pixel_count_of_labels.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -33,7 +33,7 @@
" [0,3,3,0,0],\n",
" [0,0,0,4,0],\n",
" ])) \n",
" assert np.array_equal([1,3,2,1], result)"
" assert (np.array_equal([1,3,2,1], result) or np.array_equal([18, 1,3,2,1], result))"
]
},
{
Expand Down Expand Up @@ -71,7 +71,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.10.14"
"version": "3.11.7"
}
},
"nbformat": 4,
Expand Down