Merge branch 'main' of https://github.com/havardlovas/gref4hsi

gref4hsi/scripts/coregistration.py

@@ -438,7 +438,7 @@ def main(config_path, mode):
 
     # Establish reference data
     path_orthomosaic_reference_folder = config['Absolute Paths']['orthomosaic_reference_folder']
-    orthomosaic_reference_fn = os.listdir(path_orthomosaic_reference_folder)[0] # Grab the only file in folder
+    orthomosaic_reference_fn = [f for f in os.listdir(path_orthomosaic_reference_folder) if f.endswith('tif')][0] # Grab the only file in folder that ends with *.tif
     ref_ortho_path = os.path.join(path_orthomosaic_reference_folder, orthomosaic_reference_fn)
 
     dem_path = config['Absolute Paths']['dem_path']
@@ -496,6 +496,8 @@ def main(config_path, mode):
         for file_count, hsi_composite_file in enumerate(hsi_composite_files):
 
             file_base_name = hsi_composite_file.split('.')[0]
+
+
 
             # The match data (hyperspectral)
             hsi_composite_path = os.path.join(path_composites_match, hsi_composite_file)

gref4hsi/tests/specim_process.py

@@ -194,9 +194,9 @@ def main(config_yaml, specim_mission_folder, geoid_path, config_template_path, l
     # into an h5 file. The nav data is written to "raw/nav/" subfolders, whereas hyperspectral data and calibration data 
     # written to "processed/hyperspectral/" and "processed/calibration/" subfolders
     specim_parsing_utils.main(config=config,
-                              config_specim=config_specim_preprocess)"""
+                              config_specim=config_specim_preprocess)
 
-    """# Time interpolates and reformats the pose (of the vehicle body) to "processed/nav/" folder.
+    # Time interpolates and reformats the pose (of the vehicle body) to "processed/nav/" folder.
     config = parsing_utils.export_pose(config_file_mission)
 
     # Formats model to triangular mesh and an earth centered earth fixed / geocentric coordinate system
@@ -206,8 +206,8 @@ def main(config_yaml, specim_mission_folder, geoid_path, config_template_path, l
 
 
     ## Visualize the data 3D photo model from RGB images and the time-resolved positions/orientations
-    if ENABLE_VISUALIZE:
-        visualize.show_mesh_camera(config, show_mesh = True, show_pose = True, ref_frame='ENU')
+    #if ENABLE_VISUALIZE:
+    #    visualize.show_mesh_camera(config, show_mesh = True, show_pose = True, ref_frame='ENU')
 
     # Georeference the line scans of the hyperspectral imager. Utilizes parsed data
     georeference.main(config_file_mission)