update content for demo

.gitignore

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+site/*

docs/devops.md

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 # Build platforms
 
+Content ![](https://img.shields.io/badge/status-WorkInProgress-yellow)
+
 
 ## Configure to use posit package manager
 

docs/index.md

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 Welcome to our Platform guidelines web-page. Here analysts and developers will find guidelines on how to work with our most common environments.
 
-## Environments
+We are developing platforms for each analysis type we have experience with at HCBC. Currently we fully support:
 
-* O2 open OnDemand: 
-    * For RNAseq and scRNAseq analysis use `/n/app/bcbio/R4.3.1`
-    * With these modules on: `gcc/9.2.0 imageMagick/7.1.0 geos/3.10.2 cmake/3.22.2 R/4.3.1 fftw/3.3.10 gdal/3.1.4 udunits/2.2.28  boost/1.75.0`
-    * With no `bcbio` in your `PATH`
+- bulk RNAseq analysis ![](https://img.shields.io/badge/status-beta-blue)
 
-## Supported Templates
+Got to each analysis type section to learn how to use our platform.
+
+## RNAseq
+
+* Using O2 open OnDemand: 
+    * Remove `bcbio` from you `PATH` by commenting the line in your `.bashrc` if you have it
+    * Start Rstudio With these modules on: `gcc/9.2.0 imageMagick/7.1.0 geos/3.10.2 cmake/3.22.2 R/4.3.1 fftw/3.3.10 gdal/3.1.4 udunits/2.2.28  boost/1.75.0`
+    * When the session is started, set you library path typing this command in your console Rstudio window:  `.libPaths("/n/app/bcbio/R4.3.1")`
+
+* load bcbioR with `library(bcbioR)`
+* Make sure the version is 0.1.3 with this command `packageVersion("bcbioR")` or re-install with `devtools::install_github("bcbio/bcbioR",build_manual = TRUE, build_vignettes = TRUE)`, if you are in your own environment
+* Follow this instruction https://bcbio.github.io/bcbioR/#set-base-project to start you project
+* Follow this instruction https://bcbio.github.io/bcbioR/#set-rnaseq-report-folder to start your RNAseq analysis
+
+# BCBIOR Supported Templates
 
 We used `bcbioR` to deploy folders and code to our project directories to improve robustness in our analysis.
 

docs/pipelines.md

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 # Introduction to HCBC pipelines
 
+Content ![](https://img.shields.io/badge/status-WorkInProgress-yellow)
+
 ## Nextflow in Seqera platform
 
 - Create an user here: https://cloud.seqera.io/login

mkdocs.yml

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 nav:
   - Home: index.md
   - Pipelines: pipelines.md
+  - Developers: devops.md
 theme: mkdocs