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Merge pull request #30 from hdr-bgnn/issue-26
Update Minnow_Landmarks _v1.csv
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| Landmark_Number,Definition,Ontology_SubClass,Ontology_SubClass_IRI,Code_Definition | ||
| 1,"Tip of snout, which is the anterior-most part of head",'tip of snout',UBERON:1000016,Left-most point of the head mask defined by left boundary of the bbox | ||
| 2,"Beginning of the scales at the dorsal side, where the head meets the trunk",anatomical point' | 'part of' some ('dorso-medial margin' and ('characteristic of' some head)),UBERON:0006983 | BFO:0000050 some (BSPO:0000048 and (RO:0000052 some UBERON:0000033)),Top-most point of the head mask defined by top boundary of the bbox | ||
| 3,Anterior insertion of the dorsal fin,anatomical point' | 'part of' some ('in anterior side of' some 'dorsal fin'),UBERON:0006983 | BFO:0000050 some (BSPO:0000123 some UBERON:0003097),Left-most point of the dorsal fin mask defined by left boundary of the bbox | ||
| 4,Posterior insertion of dorsal fin,anatomical point' | 'part of' some ('in posterior side of' some 'dorsal fin'),UBERON:0006983 | BFO:0000050 some (BSPO:0000122 some UBERON:0003097),Furthest bottom point of the dorsal fin defined by bottom boundary of the bbox | ||
| 5,Dorsal insertion of the caudal fin,anatomical point' | 'part of' some ('antero-dorsal margin' and ('characteristic of' some 'caudal fin')),UBERON:0006983 | BFO:0000050 some (BSPO:0000686 and (RO:0000052 some UBERON:4000164)),Left-most point of the upper half of the caudal fin mask (split through the midline) using the bbox | ||
| 6,"End of vertebral column, at the midline of the caudal fin",anatomical point' | 'part of' some ('antero-medial margin' and ('characteristic of' some 'caudal fin')),UBERON:0006983 | BFO:0000050 some (BSPO:0000042 and (RO:0000042 some UBERON:4000164)),Right-most part of the trunk mask defined by the right boundary of the bbox | ||
| 7,Ventral insertion of the caudal fin,anatomical point' | 'part of' some ('antero-ventral margin' and ('characteristic of' some 'caudal fin')),UBERON:0006983 | BFO:0000050 some (BSPO:0000688 and (RO:0000042 some UBERON:4000164)),Left-most point of the lower half of the caudal fin mask (split through the midline) using the bbox | ||
| 8,Posterior insertion of the anal fin,anatomical point' | 'part of' some ('in posterior side of' some 'anal fin'),UBERON:0006983 | BFO:0000050 some (BSPO:0000122 some UBERON:4000163),Top-most point of the anal fin mask defined by top boundary of the bbox | ||
| 9,Anterior insertion of the anal fin,anatomical point' | 'part of' some ('in anterior side of' some 'anal fin'),UBERON:0006983 | BFO:0000050 some (BSPO:0000123 some UBERON:4000163),Left-most point of the anal fin mask defined by left boundary of the bbox | ||
| 10,Anterior insertion of the pelvic fin,anatomical point' | 'part of' some ('in anterior side of' some 'pelvic fin'),UBERON:0006983 | BFO:0000050 some (BSPO:0000123 some UBERON:0000152),Left-most point of the pelvic fin mask defined by left boundary of the bbox | ||
| 11,Anterior insertion of the pectoral fin,anatomical point' | 'part of' some ('in anterior side of' some 'pectoral fin'),UBERON:0006983 | BFO:0000050 some (BSPO:0000123 some UBERON:0000151),Left-most point of the pectoral fin mask defined by left boundary of the bbox | ||
| 12,"Dorsal-most point of operculum, which is the posterior-most part of the head",anatomical point' | 'part of' some ('in posterior side of' some 'opercular flap'),UBERON:0006983 | BFO:0000050 some (BSPO:0000122 some UBERON:2000555),Right-most part of the head mask defined by the right boundary of the bbox | ||
| 13,"Ventral-most point of operculum, where the head meets the trunk",anatomical point' | 'part of' some ('in ventral side of' some 'opercular flap'),UBERON:0006983 | BFO:0000050 some (BSPO:0015102 some UBERON:2000555),Furthest bottom point of the head mask defined by bottom boundary of the bbox | ||
| 14,Anterior-most (left-most) part of eye,anatomical point' | 'part of' some ('in anterior side of' some eye),UBERON:0006983 | BFO:0000050 some (BSPO:0000123 some UBERON:0000970),Left-most point of the eye mask defined by left boundary of the bbox | ||
| 15,Posterior-most (right-most) part of eye,anatomical point' | 'part of' some ('in posterior side of' some eye),UBERON:0006983 | BFO:0000050 some (BSPO:0000122 some UBERON:0000970),Right-most part of the eye mask defined by the right boundary of the bbox | ||
| 16,Dorsal-most (upper) part of eye),anatomical point' | 'part of' some ('in dorsal side of' some eye),UBERON:0006983 | BFO:0000050 some (BSPO:0015101 some UBERON:0000970),Top-most point of the eye mask defined by top boundary of the bbox | ||
| 17,Ventral-most (lower) part of eye,anatomical point' | 'part of' some ('in ventral side of' some eye),UBERON:0006983 | BFO:0000050 some (BSPO:0015102 some UBERON:0000970),Furthest bottom point of the eye mask defined by bottom boundary of the bbox | ||
| 18,Center (centroid) of eye,anatomical point' | 'part of' some eye | 'follows axis' some 'left-right axis' | 'follows axis' some 'upper-lower axis',UBERON:0006983 | BFO:0000050 some UBERON:0000970 | BSPO:0015002 some BSPO:0000017 | BSPO:0015002 some BSPO:0000011,Center of the eye mask |
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| Type,Measurement,Abbreviation,Defintion,Ontology_SubClass,Ontology_SubClass_IRI,Code_Definition | ||
| distance,standard length using landmarks,SL_lm,length from the tip of the snout to the posterior-most part of trunk that meets the caudal fin (length from #1 to #6),"""'part of' some (length and ('characteristic of' some 'multicellular organism')) | length and ('characteristic of' some ('anatomical line' and connects some 'tip of snout' and connects some ('antero-medial margin' and ('characteristic of' some 'caudal fin')))""",BFO:0000050 some (PATO:0000122 and (RO:0000052 some UBERON:0000468)) | PATO:0000122 and (RO:0000052 some (UBERON:0006800 and RO:0002176 some UBERON:1000016 and RO:0002176 some ((BSPO:0000042 and (RO:0000042 some UBERON:4000164))), | ||
| distance,standard length using bounding box,SL_bbox,length from the tip of the snout to the posterior-most part of trunk that meets the caudal fin (distance between the left-right sides of a bounding box around the head+eye and trunk),,, | ||
| distance,standard length using bounding box,SL_bbox,length from the tip of the snout to the posterior-most part of trunk that meets the caudal fin (distance between the left-right sides of a bounding box around the head+eye and trunk),,, | ||
| area,eye area using pixels of mask,EA_m,area of the eye region (area of the eye based on the mask that segments the eye),'part of' some (area and ('characteristic of' some eye)),BFO:0000050 some (PATO:0001323 and (RO:0000052 some UBERON:0000970)), | ||
| area,head area using pixels of mask,HA_m,"area of the head region (area of the head based on the mask that segments the head, including the eye)",'part of' some (area and ('characteristic of' some head)),BFO:0000050 some (PATO:0001323 and (RO:0000052 some UBERON:0000033)), | ||
| distance,head length using landmarks,HL_lm,length from the anterior-most part of the head to the posterior-most part of the head (length from #1 to #12),'part of' some (length and ('characteristic of' some 'head')) | length and ('characteristic of' some ('anatomical line' and connects some 'tip of snout' and connects some ('anatomical point' and ('in posterior side of' some 'opercular flap'))),BFO:0000050 some (PATO:0000122 and (RO:0000052 some UBERON:0000033)) | PATO:0000122 and (RO:0000052 some (UBERON:0006800 and RO:0002176 some UBERON:1000016 and RO:0002176 some (UBERON:0006983 and (BSPO:0000122 some UBERON:2000555))), | ||
| distance,head length using bounding box,HL_bbox,length from the anterior-most part of the head to the posterior-most part of the head (distance between the left-right sides of a bounding box around the head+eye),,, | ||
| distance,head length using landmarks,HL_lm,length from the anterior-most part of the head to the posterior-most part of the head (length from #1 to #12),part of' some (length and ('characteristic of' some 'head')) | length and ('characteristic of' some ('anatomical line' and connects some 'tip of snout' and connects some ('anatomical point' and ('in posterior side of' some 'opercular flap'))),BFO:0000050 some (PATO:0000122 and (RO:0000052 some UBERON:0000033)) | PATO:0000122 and (RO:0000052 some (UBERON:0006800 and RO:0002176 some UBERON:1000016 and RO:0002176 some (UBERON:0006983 and (BSPO:0000122 some UBERON:2000555))), | ||
| distance,head length using bounding box,HL_bbox,length from the anterior-most part of the head to the posterior-most part of the head (distance between the left-right sides of a bounding box around the head+eye),,, | ||
| distance,preorbital depth using landmarks,pOD_lm,length from the anterior-most part of the eye to the anterior-most part of the head (length from #1 to #14),'part of' some (length and ('characteristic of' some 'head')) | length and ('characteristic of' some ('anatomical line' and connects some 'tip of snout' and connects some ('anatomical pont' and ('in anterior side of' some eye)))),BFO:0000050 some (PATO:0000122 and (RO:0000052 some UBERON:0000033)) | PATO:0000122 and (RO:0000052 some (UBERON:0006800 and RO:0002176 some UBERON:1000016 and RO:0002176 some (UBERON:0006983 and (BSPO:0000123 some UBERON:0000970)))), | ||
| distance,preorbital depth using bounding box,pOD_bbox,length from the anterior-most part of the eye to the anterior-most part of the head (distance between the left edge of the head bounding box and the eye bounding box),,, | ||
| distance,head depth through midline of the eye,HH_lm,length from the dorsal-most (top) part of the head to the ventral-most (bottom) part of the head through the midline of the eye (length from the dorsal-most (top) part of the head to the ventral-most (bottom) part of the head through landmark #18),'part of' some 'length' and ('characteristic of' some head)) | length and ('characteristic of' some ('anatomical line' and 'follows axis' some 'upper-lower axis' and ('characteristic of' some head))),BFO:0000050 some (PATO:0001334 and (RO:0000052 some UBERON:0000970)) | PATO:0000122 and (RO:0000052 some (UBERON:0006800 and BSPO:0015002 some BSPO:0000017 and (RO:0000052 some UBERON:0000033))), | ||
| distance,eye diameter using landmarks,ED_lm,length across the eye along the anterior-posterior (left-right) axis (length from #14 to #15),"""'part of' some (diameter and ('characteristic of' some eye)) | length and ('characteristic of' some ('anatomical line' that 'follows axis' some 'left-right axis' and ('characteristic of' some eye)))""",BFO:0000050 some (PATO:0001334 and (RO:0000052 some UBERON:0000970)) | PATO:0000122 and (RO:0000052 some (UBERON:0006800 and BSPO:0015002 some BSPO:0000017 and (RO:0000052 some UBERON:0000970))), | ||
| distance,eye diameter using boudning box,ED_bbox,length across the eye along the anterior-posterior (left-right) axis (distance between the left-right sides of a bounding box around the eye),,, | ||
| angle,fish angle using landmarks,Fa_lm,angle of the tilt of the fish from horizontal (angle between the SL_lm and and the horizontal line of the image),'part of' some (angle and ('characteristic of' some 'multicellular organism')),BFO:0000050 some (PATO:0002326 and (RO:0000052 some UBERON:0000468)), | ||
| distance,eye diameter using boudning box,ED_bbox,length across the eye along the anterior-posterior (left-right) axis (distance between the left-right sides of a bounding box around the eye),,, | ||
| angle,fish angle using landmarks,Fa_lm,angle of the tilt of the fish from horizontal (angle between the SL_lm and and the horizontal line of the image),'part of' some (angle and ('characteristic of' some 'multicellular organism')),BFO:0000050 some (PATO:0002326 and (RO:0000052 some UBERON:0000468)), | ||
| angle,fish angle using PCA,Fa_pca,angle of the tilt of the fish from horizontal (angle between the pca through the midline of the fish mask and the horizontal line of the image),,, |